Gene : Gorai.007G165500 G. raimondii v2.1
Defline:  (1 of 17) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  1655
Name:  ? Gorai.007G165500 Secondary Identifier:  ? PAC:26781970
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.007G165500 0.5kb upstream 0.5kb upstream 2739 true Chr07: 14588028-14590766 Gossypium raimondii
Gorai.007G165500 0.5kb upstream 0.5kb upstream 500 false Chr07: 14590267-14590766 Gossypium raimondii
Gorai.007G165500 0.5kb downstream 0.5kb downstream 2739 true Chr07: 14587528-14590266 Gossypium raimondii
Gorai.007G165500 0.5kb downstream 0.5kb downstream 500 false Chr07: 14587528-14588027 Gossypium raimondii
Gorai.007G165500 1.0kb upstream 1.0kb upstream 3239 true Chr07: 14588028-14591266 Gossypium raimondii
Gorai.007G165500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 14590267-14591266 Gossypium raimondii
Gorai.007G165500 1.0kb downstream 1.0kb downstream 3239 true Chr07: 14587028-14590266 Gossypium raimondii
Gorai.007G165500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 14587028-14588027 Gossypium raimondii
Gorai.007G165500 2.0kb upstream 2.0kb upstream 4239 true Chr07: 14588028-14592266 Gossypium raimondii
Gorai.007G165500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 14590267-14592266 Gossypium raimondii
Gorai.007G165500 2.0kb downstream 2.0kb downstream 4239 true Chr07: 14586028-14590266 Gossypium raimondii
Gorai.007G165500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 14586028-14588027 Gossypium raimondii
Gorai.007G165500 5.0kb upstream 5.0kb upstream 7239 true Chr07: 14588028-14595266 Gossypium raimondii
Gorai.007G165500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 14590267-14595266 Gossypium raimondii
Gorai.007G165500 5.0kb downstream 5.0kb downstream 7239 true Chr07: 14583028-14590266 Gossypium raimondii
Gorai.007G165500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 14583028-14588027 Gossypium raimondii
Gorai.007G165500 10.0kb upstream 10.0kb upstream 12239 true Chr07: 14588028-14600266 Gossypium raimondii
Gorai.007G165500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 14590267-14600266 Gossypium raimondii
Gorai.007G165500 10.0kb downstream 10.0kb downstream 12239 true Chr07: 14578028-14590266 Gossypium raimondii
Gorai.007G165500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 14578028-14588027 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838227 5264 Brassicales-Malvales View MSA
124322418 5266 SBM View MSA
124169138 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain