Protein Domain : IPR009349

Type:  Domain Name:  Zinc finger, C2HC5-type
Description:  Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis(African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members ofthe same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4. Short Name:  Znf_C2HC5

0 Child Features

0 Contains

1 Cross References

Identifier
PF06221

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0008270 IPR009349
GO:0006355 IPR009349
GO:0005634 IPR009349

3 Ontology Annotations

GO Term Gene Name
GO:0008270 IPR009349
GO:0006355 IPR009349
GO:0005634 IPR009349

0 Parent Features

373 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
evm.TU.contig_35819.1 PAC:16430720 Carica papaya 375  
30147.m014123 B9R996 PAC:16820136 Ricinus communis 413  
orange1.1g022817m A0A067GL28 PAC:18118730 Citrus sinensis 291  
orange1.1g015323m A0A067GBW6 PAC:18118728 Citrus sinensis 409  
orange1.1g019483m A0A067GLC6 PAC:18118729 Citrus sinensis 340  
AT3G47610.1 Q9SN77 PAC:19659413 Arabidopsis thaliana 408  
Thhalv10010423m V4LTI9 PAC:20207620 Eutrema salsugineum 405  
Ciclev10020397m V4VJH1 PAC:20810615 Citrus clementina 409  
Lus10024226 PAC:23175803 Linum usitatissimum 407  
Lus10023596 PAC:23148334 Linum usitatissimum 433  
Potri.012G068900.1 B9I2Y9 PAC:27049836 Populus trichocarpa 389  
Potri.012G068900.2 PAC:27049837 Populus trichocarpa 360  
Potri.012G068900.3 B9I2Y9 PAC:27049835 Populus trichocarpa 389  
Potri.003G168100.1 B9GZD7 PAC:26997189 Populus trichocarpa 159  
Potri.011G109400.1 A0A2K1YII1 PAC:27002114 Populus trichocarpa 114  
Gorai.003G096900.2 A0A0D2RJQ6 PAC:26797848 Gossypium raimondii 403  
Gorai.003G096900.3 A0A0D2QQV7 PAC:26797849 Gossypium raimondii 394  
Gorai.003G096900.1 A0A0D2MLP7 PAC:26797847 Gossypium raimondii 436  
Thecc1EG013953t2 A0A061FX34 PAC:27449600 Theobroma cacao 279  
Thecc1EG013953t1 A0A061FWB9 PAC:27449598 Theobroma cacao 405  
Thecc1EG013953t3 A0A061FY68 PAC:27449599 Theobroma cacao 298  
Migut.I00173.2.p PAC:28931147 Mimulus guttatus 343  
Migut.I00173.1.p A0A022R7X8 PAC:28931146 Mimulus guttatus 370  
Araha.14121s0001.1.p PAC:28840905 Arabidopsis halleri 407  
Cagra.1659s0004.1.p PAC:28915228 Capsella grandiflora 409  
Glyma.17G099300.1.p I1MTT1 PAC:30478571 Glycine max 431  
Brara.F01739.1.p A0A397YYJ6 PAC:30628097 Brassica rapa FPsc 399  
Bostr.18473s0196.1.p PAC:30666849 Boechera stricta 409  
Medtr4g108590.1 G7JQZ7 PAC:31114591 Medicago truncatula 433  
SapurV1A.0481s0060.1.p PAC:31441541 Salix purpurea 380  

6 Publications

First Author Title Year Journal Volume Pages PubMed ID
            12665246
            15718139
            17210253
            15963892
            10529348
            11179890