Protein Domain : IPR008929

Type:  Domain Name:  Chondroitin AC/alginate lyase
Description:  Glycosaminoglycans (GAGs) are highly negatively charged polysaccharides, formed from disaccharide repeating units. For a number of bacterial species, including Flavobacterium heparinum synthesize GAG lyases, these enzymes are used to degrade and utilise glycosaminoglycans as a source of carbon in the bacterium's natural environment. In topological terms, the known structures of polysaccharide lyases fall within two protein fold families. Pectin and pectate lyases, as well as chondroitin lyase B belong to the right-handed parallel beta-helix family and have the substrate-binding site in roughly the same topological location. The second topological family, all of which contain a domain consisting of an incomplete (alpha/alpha)5 toroid, includes chondroitin AC lyase family, and alginate lyase A1-III family from Sphingomonas species A1 []. Short Name:  Chondroitin_lyas

2 Child Features

DB identifier Type Name
IPR008397 Domain Alginate lyase domain
IPR012329 Domain Polysaccharide lyase family 8, N-terminal

0 Contains

1 Cross References

Identifier
SSF48230

1 Found In

DB identifier Type Name
IPR006934 Family Baculovirus occlusion-derived virus envelope, E66

0 GO Annotation

0 Ontology Annotations

0 Parent Features

17 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
evm.model.supercontig_15.72 PAC:16409431 Carica papaya 272  
35969.m000014 B9TKI1 PAC:16826816 Ricinus communis 322  
27473.m000043 B9TBM1 PAC:16798466 Ricinus communis 302  
57697 C1E3I8 PAC:27400495 Micromonas sp RCC299 1539  
Medtr3g021350.1 G7IZ38 PAC:31053697 Medicago truncatula 91  
evm_27.model.AmTr_v1.0_scaffold00026.48 W1PQN8 PAC:31554139 Amborella trichopoda 80  
Pp3c19_14160V3.1.p A0A2K1IYD4 PAC:32938880 Physcomitrium patens 81  
Zm00008a039477_P01 PAC:37215667 Zea mays PH207 132  
Zm00008a039501_P01 PAC:37216053 Zea mays PH207 132  
Cz04g20060.t1 PAC:38235673 Chromochloris zofingiensis 435  
Isati.3523s0011.1.p PAC:39318690 Isatis tinctoria 110  
Camar.1251s0003.1.p PAC:39613185 Cakile maritima 72  
HanXRQChr10g0302291 A0A251TKU9 PAC:40295145 Helianthus annuus 257  
Sphfalx18G012300.1.p PAC:41949545 Sphagnum fallax 116  
Gomus.D10G079300.1.p A0A5D2T430 PAC:42118881 Gossypium mustelinum 94  
Gohir.D10G071224.1.p PAC:42467364 Gossypium hirsutum 128  
Gohir.D10G071368.1.p PAC:42469307 Gossypium hirsutum 125  

1 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11327856