Protein Domain : IPR016114

Type:  Domain Name:  African swine fever virus, p72, major capsid
Description:  The major capsid proteins (vp54 and vp72) found in Iridoviruses, Phycodnaviruses, Asfarviruses and Ascoviruses share the same structure. All these viruses are type II dsDNA viruses with no RNA stage. This is the most abundant structural protein and can account for up to 45% of virion protein []. The structure of vp54 has been determined from Paramecium bursaria Chlorella virus 1(PBCV-1), a very large icosahedral virus containing an internal membrane enclosed within a glycoprotein coat. The vp54 protein is a duplication consisting of two domains with a similar fold packed together like the nucleoplasmin subunits. The vp54 protein forms a trimer, where the domains are arranged around a pseudo 6-fold axis. The domains have a beta-sandwich structure consisting of 8 strands in two sheets with a jelly-roll topology [].This entry represents a structural subdomain with a distorted beta-sandwich topology. Short Name:  ASFV_p72

0 Child Features

0 Contains

1 Cross References

Identifier
G3DSA:2.70.9.20

2 Found Ins

DB identifier Type Name
IPR016112 Domain Group II dsDNA virus coat/capsid protein
IPR007542 Domain Virus, major capsid protein, C-terminal

2 GO Annotations

GO Term Gene Name
GO:0005198 IPR016114
GO:0019028 IPR016114

2 Ontology Annotations

GO Term Gene Name
GO:0005198 IPR016114
GO:0019028 IPR016114

0 Parent Features

111 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
Gorai.003G125200.2 A0A0D2P0G1 PAC:26799973 Gossypium raimondii 165  
Gorai.003G125200.1 A0A0D2QJR1 PAC:26799974 Gossypium raimondii 165  
Cagra.29687s0001.1.p PAC:28896011 Capsella grandiflora 117  
Glyma.08G334500.3.p A0A0R0IZM7 PAC:30540199 Glycine max 162  
Glyma.08G334500.4.p A0A0R0J1T2 PAC:30540198 Glycine max 163  
Glyma.08G334500.1.p A0A0R0IW73 PAC:30540197 Glycine max 171  
Glyma.18G067500.1.p K7MQC4 PAC:30555524 Glycine max 169  
Glyma.18G067500.2.p K7MQC5 PAC:30555525 Glycine max 149  
Bradi1g49430.1.p I1H129 PAC:32803181 Brachypodium distachyon 232  
Pp3c5_23700V3.3.p A0A2K1KKU4 PAC:32953212 Physcomitrium patens 532  
Pp3c5_23700V3.1.p A0A2K1KKU4 PAC:32953210 Physcomitrium patens 532  
Pp3c5_23700V3.2.p A0A2K1KKU4 PAC:32953211 Physcomitrium patens 532  
Brdisv1Per11046356m.p PAC:33249645 Brachypodium distachyon Per1 152  
Brdisv1Per11008205m.p PAC:33224119 Brachypodium distachyon Per1 246  
Brdisv1Uni21007499m.p PAC:33266563 Brachypodium distachyon Uni2 233  
Brdisv1BdTR7a1008117m.p PAC:33350195 Brachypodium distachyon BdTR7a 233  
Brdisv1Koz-11007957m.p I1H129 PAC:33393417 Brachypodium distachyon Koz-1 232  
Brdisv20Bd21Ref1008765m.p I1H129 PAC:33448473 Brachypodium distachyon Bd21 AnntCtrl 232  
Brdisv1ABR9_r1007995m.p PAC:33528799 Brachypodium distachyon ABR9 231  
Brdisv1BdTR13a1008298m.p I1H129 PAC:33569760 Brachypodium distachyon BdTR13a 232  
Brdisv1pangenome1022075m.p I1H129 PAC:33655102 Brachypodium distachyon Pangenome 232  
Brdisv1ABR6_r1008060m.p PAC:33679439 Brachypodium distachyon ABR6 233  
Brdisv1ABR21008085m.p PAC:33734139 Brachypodium distachyon ABR2 233  
Brdisv1Bis-11007584m.p PAC:33779923 Brachypodium distachyon Bis-1 232  
Brdisv1S8iiC1031748m.p PAC:33841770 Brachypodium distachyon S8iic 233  
Brdisv1Tek-21007590m.p PAC:33899535 Brachypodium distachyon Tek-2 231  
Brdisv1Kah-51007930m.p I1H129 PAC:33945895 Brachypodium distachyon Kah-5 232  
Brdisv1ABR31046694m.p I1H129 PAC:34006929 Brachypodium distachyon ABR3 232  
Brdisv1ABR31046586m.p PAC:34006904 Brachypodium distachyon ABR3 152  
Brdisv1Bd30-11042175m.p PAC:34059429 Brachypodium distachyon Bd30-1 232  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            10082389
            12411581