Protein Domain : IPR008916

Type:  Domain Name:  Retrovirus capsid, C-terminal
Description:  The Gag polyprotein from retroviruses is processed by viral protease to produce the major structural proteins, including the capsid protein. The newly formed capsid protein rearranges to form the capsid core particle that surrounds the viral genome of the mature virus. The capsid is composed of two domains, the N-terminal domain (NTD), which contributes to viral core formation, and the C-terminal domain (CTD), which is required for capsid dimerisation, Gag oligomerization and viral formation. The CTD contains the major homology region (MHR), a stretch of 20 amino acids that is conserved across retroviruses and is essential for viral assembly, maturation and infectivity. The CTD is composed of a bundle of four helices in an up and down arrangement, where helix 3 is shorter than the others [, , ]. Short Name:  Retrov_capsid_C

1 Child Features

DB identifier Type Name
IPR003309 Domain SCAN domain

0 Contains

2 Cross Referencess

Identifier
G3DSA:1.10.1200.30
SSF47353

1 Found In

DB identifier Type Name
IPR000721 Family Retroviral nucleocapsid protein Gag

0 GO Annotation

0 Ontology Annotations

0 Parent Features

488 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
evm.model.supercontig_1524.3 PAC:16409666 Carica papaya 161  
evm.model.supercontig_209.42 PAC:16413359 Carica papaya 386  
Cucsa.369450.1 PAC:16981735 Cucumis sativus 549  
AT5G18420.3 F4JWN4 PAC:19671976 Arabidopsis thaliana 439  
AT5G18420.1 B4F7Q4 PAC:19671975 Arabidopsis thaliana 441  
AT5G18420.2 B4F7N8 PAC:19671974 Arabidopsis thaliana 442  
Potri.004G160800.2 A0A2K2AVH5 PAC:26991021 Populus trichocarpa 328  
Potri.004G160800.1 PAC:26991019 Populus trichocarpa 423  
Potri.004G160800.4 PAC:26991020 Populus trichocarpa 351  
Gorai.009G090400.1 A0A0D2TM33 PAC:26762502 Gossypium raimondii 322  
Gorai.011G103700.1 A0A0D2RK57 PAC:26809972 Gossypium raimondii 90  
63571 C1EGA5 PAC:27402949 Micromonas sp RCC299 147  
Cagra.1365s0059.1.p PAC:28919226 Capsella grandiflora 175  
Cagra.6845s0032.1.p PAC:28894097 Capsella grandiflora 348  
Glyma.10G140600.1.p K7LJC4 PAC:30476739 Glycine max 67  
Bostr.13129s0108.6.p PAC:30672793 Boechera stricta 144  
Bostr.13129s0108.4.p PAC:30672791 Boechera stricta 144  
Bostr.13129s0108.5.p PAC:30672792 Boechera stricta 144  
Bostr.13129s0108.2.p PAC:30672788 Boechera stricta 175  
Bostr.13129s0108.1.p PAC:30672790 Boechera stricta 175  
Bostr.13129s0108.3.p PAC:30672789 Boechera stricta 175  
Bostr.15697s0439.1.p PAC:30662199 Boechera stricta 117  
Medtr2g021280.1 G7IKD9 PAC:31064453 Medicago truncatula 388  
Medtr4g043620.1 G7JUR0 PAC:31108072 Medicago truncatula 306  
Medtr4g073670.1 A0A072UM93 PAC:31109882 Medicago truncatula 71  
Medtr5g067270.1 G7K611 PAC:31089100 Medicago truncatula 112  
SapurV1A.4645s0010.1.p PAC:31396147 Salix purpurea 403  
SapurV1A.4645s0010.2.p PAC:31396148 Salix purpurea 375  
SapurV1A.4645s0010.3.p PAC:31396149 Salix purpurea 358  
SapurV1A.4645s0010.4.p PAC:31396150 Salix purpurea 318  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            9346481
            9931251
            10669613