Protein Domain : IPR006678

Type:  Domain Name:  tRNA intron endonuclease, N-terminal
Description:  This entry represents a 2-layer alpha/beta domain found at the N-terminal in homotetrameric tRNA-intron endonucleases [], and as domains 1 (N-terminal) and 3 in the homodimeric enzymes []. tRNA-intron endonucleases () remove tRNA introns by cleaving pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-hydroxyl termini []. These enzymes recognise a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp []. Although homotetrameric enzymes contain four active sites, only two participate in the cleavage, and should therefore, be considered as a dimer of dimers. Short Name:  tRNA_intron_Endonuc_N

0 Child Features

0 Contains

2 Cross Referencess

Identifier
PF02778
SSF55267

1 Found In

DB identifier Type Name
IPR016442 Family tRNA-splicing endonuclease, archaeal short subfamily

2 GO Annotations

GO Term Gene Name
GO:0000213 IPR006678
GO:0006388 IPR006678

2 Ontology Annotations

GO Term Gene Name
GO:0000213 IPR006678
GO:0006388 IPR006678

0 Parent Features

695 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
evm.model.supercontig_318.5 PAC:16417308 Carica papaya 243  
Cucsa.130610.2 A0A0A0KXV5 PAC:16962415 Cucumis sativus 267  
orange1.1g043831m PAC:18097257 Citrus sinensis 243  
AT5G60230.1 Q9LSS3 PAC:19666988 Arabidopsis thaliana 250  
AT3G45577.1 Q2V3Q6 PAC:19660227 Arabidopsis thaliana 118  
AT3G45590.2 Q9M1E8 PAC:19659636 Arabidopsis thaliana 237  
AT3G45590.1 Q9M1E8 PAC:19659635 Arabidopsis thaliana 237  
Thhalv10015366m V4KWE1 PAC:20203065 Eutrema salsugineum 255  
Lus10006218 PAC:23139698 Linum usitatissimum 556  
Lus10019074 PAC:23152708 Linum usitatissimum 129  
Lus10036866 PAC:23171197 Linum usitatissimum 271  
Potri.009G131500.1 B9HR90 PAC:26986298 Populus trichocarpa 235  
Potri.014G083400.2 A0A2K1XSD4 PAC:27032114 Populus trichocarpa 122  
Potri.014G083400.1 A0A2K1XSD4 PAC:27032113 Populus trichocarpa 122  
Gorai.002G227800.4 A0A0D2NG12 PAC:26796098 Gossypium raimondii 263  
Gorai.002G227800.3 A0A0D2QXX9 PAC:26796100 Gossypium raimondii 197  
Gorai.002G227800.2 A0A0D2NG12 PAC:26796099 Gossypium raimondii 263  
Gorai.013G002800.2 A0A0D2TSQ7 PAC:26790358 Gossypium raimondii 245  
Gorai.013G002800.1 A0A0D2TSQ7 PAC:26790357 Gossypium raimondii 245  
Gorai.013G255400.1 A0A0D2SK56 PAC:26789300 Gossypium raimondii 230  
Migut.D02178.1.p PAC:28929480 Mimulus guttatus 250  
Migut.I00230.2.p A0A022RA43 PAC:28931458 Mimulus guttatus 250  
Migut.I00230.4.p PAC:28931459 Mimulus guttatus 248  
Migut.I00230.5.p PAC:28931460 Mimulus guttatus 248  
Migut.I00230.3.p A0A022RA43 PAC:28931457 Mimulus guttatus 250  
Migut.I00232.1.p PAC:28930938 Mimulus guttatus 211  
Migut.I00236.1.p PAC:28931038 Mimulus guttatus 200  
Migut.I00245.1.p A0A022R5B4 PAC:28930250 Mimulus guttatus 163  
Migut.K00098.1.p A0A022Q0U1 PAC:28936962 Mimulus guttatus 277  
Migut.B00971.1.p PAC:28947700 Mimulus guttatus 374  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            9200602
            9535656
            14993668
            16690865