Protein Domain : IPR025712

Type:  Domain Name:  Nucleoporin Nup54, alpha-helical domain
Description:  This entry represents the alpha-helical domain of human Nup54. Nup54 interacts with Nup58 via the C-terminal part of this domain and Nup62 via the N-terminal part to form the nucleoporin complex []. Nup54, Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel, and as such they would form a zone of equal affinity spanning the central channel. The diffusion of importin-beta import complexes through the central channel may be a stochastic process as the affinities are similar, whereas movement from cytoplasmic fibrils to the central channel and from the central channel to the nuclear basket would be facilitated by the subtle differences in affinity between them [, ]. In yeast, Nup54 is known as Nup57. Short Name:  Nup54_alpha-helical_dom

0 Child Features

0 Contains

1 Cross References

Identifier
PF13874

0 Found In

0 GO Annotation

0 Ontology Annotations

0 Parent Features

445 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
evm.model.supercontig_43.12 PAC:16419929 Carica papaya 401  
29929.m004668 B9RMG3 PAC:16813907 Ricinus communis 395  
orange1.1g033411m A0A067DBA8 PAC:18115638 Citrus sinensis 120  
AT1G24310.1 Q8GYF7 PAC:19651622 Arabidopsis thaliana 377  
Thhalv10008300m V4K928 PAC:20185665 Eutrema salsugineum 304  
Ciclev10031923m V4VFM8 PAC:20803860 Citrus clementina 359  
Lus10037010 PAC:23171059 Linum usitatissimum 397  
Lus10015795 PAC:23167659 Linum usitatissimum 367  
Potri.010G059100.1 B9HT86 PAC:26982338 Populus trichocarpa 384  
Potri.008G176100.1 PAC:27038325 Populus trichocarpa 351  
Gorai.005G168700.2 A0A0D2PU93 PAC:26804642 Gossypium raimondii 425  
Gorai.005G168700.1 A0A0D2PU93 PAC:26804643 Gossypium raimondii 425  
39521 I0Z6Z9 PAC:27393715 Coccomyxa subellipsoidea C-169 451  
138324 PAC:27339823 Micromonas pusilla CCMP1545 190  
61855 C1FIF3 PAC:27397292 Micromonas sp RCC299 585  
29138 A4RRU3 PAC:27417638 Ostreococcus lucimarinus 766  
Thecc1EG008907t2 A0A061E5J6 PAC:27461902 Theobroma cacao 385  
Thecc1EG008907t1 A0A061E6B8 PAC:27461901 Theobroma cacao 403  
Migut.K00712.1.p A0A022QHC0 PAC:28938376 Mimulus guttatus 362  
Araha.0656s0020.1.p PAC:28859886 Arabidopsis halleri 187  
Cagra.2625s0005.1.p PAC:28897206 Capsella grandiflora 388  
Glyma.11G249200.1.p I1LN96 PAC:30528311 Glycine max 349  
Glyma.18G008100.1.p I1MYG9 PAC:30554467 Glycine max 391  
Brara.H02071.1.p A0A397YEW8 PAC:30648267 Brassica rapa FPsc 398  
Bostr.15697s0049.1.p PAC:30662381 Boechera stricta 396  
Cre12.g542950.t1.1 A0A2K3D6R8 PAC:30791957 Chlamydomonas reinhardtii 467  
Medtr3g085590.1 G7JC14 PAC:31056642 Medicago truncatula 380  
SapurV1A.0330s0030.1.p PAC:31413330 Salix purpurea 387  
SapurV1A.0096s0060.1.p PAC:31414001 Salix purpurea 392  
Spipo9G0062500 PAC:31514196 Spirodela polyrhiza 396  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            12791264
            12656985
            22036567