Gene : fgenesh1_pm_6_num_29 C. subellipsoidea C-169 v2.0
Defline:  (1 of 2) PF05834 - Lycopene cyclase protein (Lycopene_cycl) Genomic Order:  80
Name:  ? fgenesh1_pm_6_num_29 Secondary Identifier:  ? PAC:27391066
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
CsubellipsoideaC-169 CAROTENOID-PWY Coccomyxa subellipsoidea C-169 pathologic  
CsubellipsoideaC-169 PWY-5943 Coccomyxa subellipsoidea C-169 pathologic  
CsubellipsoideaC-169 PWY-5947 Coccomyxa subellipsoidea C-169 pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
fgenesh1_pm_6_num_29 0.5kb upstream 0.5kb upstream 4665 true scaffold_6: 432724-437388 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 432724-433223 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 0.5kb downstream 0.5kb downstream 4665 true scaffold_6: 433224-437888 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 437389-437888 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 1.0kb upstream 1.0kb upstream 5165 true scaffold_6: 432224-437388 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 432224-433223 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 1.0kb downstream 1.0kb downstream 5165 true scaffold_6: 433224-438388 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 437389-438388 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 2.0kb upstream 2.0kb upstream 6165 true scaffold_6: 431224-437388 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 431224-433223 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 2.0kb downstream 2.0kb downstream 6165 true scaffold_6: 433224-439388 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 437389-439388 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 5.0kb upstream 5.0kb upstream 9165 true scaffold_6: 428224-437388 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 428224-433223 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 5.0kb downstream 5.0kb downstream 9165 true scaffold_6: 433224-442388 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 437389-442388 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 10.0kb upstream 10.0kb upstream 14165 true scaffold_6: 423224-437388 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 423224-433223 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 10.0kb downstream 10.0kb downstream 14165 true scaffold_6: 433224-447388 Coccomyxa subellipsoidea C-169
fgenesh1_pm_6_num_29 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 437389-447388 Coccomyxa subellipsoidea C-169

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124111338 5260 Chlorophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier