Gene : estExt_fgenesh1_pm.C_120024 C. subellipsoidea C-169 v2.0
Defline:  (1 of 2) 6.1.1.21 - Histidine--tRNA ligase / Histidyl-tRNA synthetase Genomic Order:  84
Name:  ? estExt_fgenesh1_pm.C_120024 Secondary Identifier:  ? PAC:27391580
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
CsubellipsoideaC-169 TRNA-CHARGING-PWY Coccomyxa subellipsoidea C-169 pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
estExt_fgenesh1_pm.C_120024 0.5kb upstream 0.5kb upstream 6028 true scaffold_12: 429084-435111 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 429084-429583 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 0.5kb downstream 0.5kb downstream 6028 true scaffold_12: 429584-435611 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 435112-435611 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 1.0kb upstream 1.0kb upstream 6528 true scaffold_12: 428584-435111 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 428584-429583 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 1.0kb downstream 1.0kb downstream 6528 true scaffold_12: 429584-436111 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 435112-436111 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 2.0kb upstream 2.0kb upstream 7528 true scaffold_12: 427584-435111 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 427584-429583 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 2.0kb downstream 2.0kb downstream 7528 true scaffold_12: 429584-437111 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 435112-437111 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 5.0kb upstream 5.0kb upstream 10528 true scaffold_12: 424584-435111 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 424584-429583 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 5.0kb downstream 5.0kb downstream 10528 true scaffold_12: 429584-440111 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 435112-440111 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 10.0kb upstream 10.0kb upstream 15528 true scaffold_12: 419584-435111 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 10.0kb upstream 10.0kb upstream 10000 false scaffold_12: 419584-429583 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 10.0kb downstream 10.0kb downstream 15528 true scaffold_12: 429584-445111 Coccomyxa subellipsoidea C-169
estExt_fgenesh1_pm.C_120024 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 435112-445111 Coccomyxa subellipsoidea C-169

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124095167 5260 Chlorophyte Singleton cluster - no MSA
123427860 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier