Gene : AL1G34060 A. lyrata v2.1

Defline:  (1 of 1) PTHR13871:SF43 - CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN Genomic Order:  2277
Name:  ? AL1G34060 Secondary Identifier:  ? PAC:35930383

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7039 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G34060 0.5kb upstream 0.5kb upstream 2473   true scaffold_1: 9034310-9036782 Arabidopsis lyrata
AL1G34060 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 9036283-9036782 Arabidopsis lyrata
AL1G34060 0.5kb downstream 0.5kb downstream 2473   true scaffold_1: 9033810-9036282 Arabidopsis lyrata
AL1G34060 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 9033810-9034309 Arabidopsis lyrata
AL1G34060 1.0kb upstream 1.0kb upstream 2973   true scaffold_1: 9034310-9037282 Arabidopsis lyrata
AL1G34060 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 9036283-9037282 Arabidopsis lyrata
AL1G34060 1.0kb downstream 1.0kb downstream 2973   true scaffold_1: 9033310-9036282 Arabidopsis lyrata
AL1G34060 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 9033310-9034309 Arabidopsis lyrata
AL1G34060 2.0kb upstream 2.0kb upstream 3973   true scaffold_1: 9034310-9038282 Arabidopsis lyrata
AL1G34060 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 9036283-9038282 Arabidopsis lyrata
AL1G34060 2.0kb downstream 2.0kb downstream 3973   true scaffold_1: 9032310-9036282 Arabidopsis lyrata
AL1G34060 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 9032310-9034309 Arabidopsis lyrata
AL1G34060 5.0kb upstream 5.0kb upstream 6973   true scaffold_1: 9034310-9041282 Arabidopsis lyrata
AL1G34060 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 9036283-9041282 Arabidopsis lyrata
AL1G34060 5.0kb downstream 5.0kb downstream 6973   true scaffold_1: 9029310-9036282 Arabidopsis lyrata
AL1G34060 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 9029310-9034309 Arabidopsis lyrata
AL1G34060 10.0kb upstream 10.0kb upstream 11973   true scaffold_1: 9034310-9046282 Arabidopsis lyrata
AL1G34060 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 9036283-9046282 Arabidopsis lyrata
AL1G34060 10.0kb downstream 10.0kb downstream 11973   true scaffold_1: 9024310-9036282 Arabidopsis lyrata
AL1G34060 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 9024310-9034309 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368030 5261 Brassicaceae View MSA
123840186 5264 Brassicales-Malvales View MSA
124340169 5266 SBM View MSA
124239800 5268 Malvidae View MSA
124061388 5270 Rosid View MSA
123737887 5271 Pentapetalae View MSA
122796546 5272 Eudicot View MSA
122051127 5273 Angiosperm View MSA
121351229 5274 Embryophyte View MSA
123382066 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain