Gene : AL1G35430 A. lyrata v2.1

Defline:  (1 of 3) PTHR11680:SF7 - SERINE HYDROXYMETHYLTRANSFERASE 6-RELATED Genomic Order:  2409
Name:  ? AL1G35430 Secondary Identifier:  ? PAC:35931550

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata GLYSYN-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-2161 Arabidopsis lyrata pathologic  
Alyrata PWY-3841 Arabidopsis lyrata pathologic  
Alyrata SER-GLYSYN-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G35430 0.5kb upstream 0.5kb upstream 4265   true scaffold_1: 9639347-9643611 Arabidopsis lyrata
AL1G35430 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 9639347-9639846 Arabidopsis lyrata
AL1G35430 0.5kb downstream 0.5kb downstream 4265   true scaffold_1: 9639847-9644111 Arabidopsis lyrata
AL1G35430 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 9643612-9644111 Arabidopsis lyrata
AL1G35430 1.0kb upstream 1.0kb upstream 4765   true scaffold_1: 9638847-9643611 Arabidopsis lyrata
AL1G35430 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 9638847-9639846 Arabidopsis lyrata
AL1G35430 1.0kb downstream 1.0kb downstream 4765   true scaffold_1: 9639847-9644611 Arabidopsis lyrata
AL1G35430 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 9643612-9644611 Arabidopsis lyrata
AL1G35430 2.0kb upstream 2.0kb upstream 5765   true scaffold_1: 9637847-9643611 Arabidopsis lyrata
AL1G35430 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 9637847-9639846 Arabidopsis lyrata
AL1G35430 2.0kb downstream 2.0kb downstream 5765   true scaffold_1: 9639847-9645611 Arabidopsis lyrata
AL1G35430 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 9643612-9645611 Arabidopsis lyrata
AL1G35430 5.0kb upstream 5.0kb upstream 8765   true scaffold_1: 9634847-9643611 Arabidopsis lyrata
AL1G35430 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 9634847-9639846 Arabidopsis lyrata
AL1G35430 5.0kb downstream 5.0kb downstream 8765   true scaffold_1: 9639847-9648611 Arabidopsis lyrata
AL1G35430 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 9643612-9648611 Arabidopsis lyrata
AL1G35430 10.0kb upstream 10.0kb upstream 13765   true scaffold_1: 9629847-9643611 Arabidopsis lyrata
AL1G35430 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 9629847-9639846 Arabidopsis lyrata
AL1G35430 10.0kb downstream 10.0kb downstream 13765   true scaffold_1: 9639847-9653611 Arabidopsis lyrata
AL1G35430 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 9643612-9653611 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371827 5261 Brassicaceae View MSA
123838669 5264 Brassicales-Malvales View MSA
124343045 5266 SBM View MSA
124253011 5268 Malvidae View MSA
124069560 5270 Rosid View MSA
123741866 5271 Pentapetalae View MSA
122787051 5272 Eudicot View MSA
122046261 5273 Angiosperm View MSA
121345900 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain