Gene : AL1G39980 A. lyrata v2.1

Defline:  (1 of 1) K01886 - glutaminyl-tRNA synthetase (QARS, glnS) Genomic Order:  2835
Name:  ? AL1G39980 Secondary Identifier:  ? PAC:35931224

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata TRNA-CHARGING-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G39980 0.5kb upstream 0.5kb upstream 5735   true scaffold_1: 11635393-11641127 Arabidopsis lyrata
AL1G39980 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 11635393-11635892 Arabidopsis lyrata
AL1G39980 0.5kb downstream 0.5kb downstream 5735   true scaffold_1: 11635893-11641627 Arabidopsis lyrata
AL1G39980 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 11641128-11641627 Arabidopsis lyrata
AL1G39980 1.0kb upstream 1.0kb upstream 6235   true scaffold_1: 11634893-11641127 Arabidopsis lyrata
AL1G39980 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 11634893-11635892 Arabidopsis lyrata
AL1G39980 1.0kb downstream 1.0kb downstream 6235   true scaffold_1: 11635893-11642127 Arabidopsis lyrata
AL1G39980 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 11641128-11642127 Arabidopsis lyrata
AL1G39980 2.0kb upstream 2.0kb upstream 7235   true scaffold_1: 11633893-11641127 Arabidopsis lyrata
AL1G39980 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 11633893-11635892 Arabidopsis lyrata
AL1G39980 2.0kb downstream 2.0kb downstream 7235   true scaffold_1: 11635893-11643127 Arabidopsis lyrata
AL1G39980 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 11641128-11643127 Arabidopsis lyrata
AL1G39980 5.0kb upstream 5.0kb upstream 10235   true scaffold_1: 11630893-11641127 Arabidopsis lyrata
AL1G39980 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 11630893-11635892 Arabidopsis lyrata
AL1G39980 5.0kb downstream 5.0kb downstream 10235   true scaffold_1: 11635893-11646127 Arabidopsis lyrata
AL1G39980 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 11641128-11646127 Arabidopsis lyrata
AL1G39980 10.0kb upstream 10.0kb upstream 15235   true scaffold_1: 11625893-11641127 Arabidopsis lyrata
AL1G39980 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 11625893-11635892 Arabidopsis lyrata
AL1G39980 10.0kb downstream 10.0kb downstream 15235   true scaffold_1: 11635893-11651127 Arabidopsis lyrata
AL1G39980 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 11641128-11651127 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369642 5261 Brassicaceae View MSA
123834323 5264 Brassicales-Malvales View MSA
124337419 5266 SBM View MSA
124240630 5268 Malvidae View MSA
124062151 5270 Rosid View MSA
123744952 5271 Pentapetalae View MSA
122789610 5272 Eudicot View MSA
122046880 5273 Angiosperm View MSA
121346731 5274 Embryophyte View MSA
123424701 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain