Gene : AL1G39850 A. lyrata v2.1

Defline:  (1 of 2) PTHR31561:SF5 - 3-KETOACYL-COA SYNTHASE 5-RELATED Genomic Order:  2822
Name:  ? AL1G39850 Secondary Identifier:  ? PAC:35932640

Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5080 Arabidopsis lyrata pathologic  
Alyrata PWY-6433 Arabidopsis lyrata pathologic  
Alyrata PWY-6598 Arabidopsis lyrata pathologic  
Alyrata PWY-7036 Arabidopsis lyrata pathologic  
Alyrata PWY-7601 Arabidopsis lyrata pathologic  
Alyrata PWY-7619 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G39850 0.5kb upstream 0.5kb upstream 2357   true scaffold_1: 11578889-11581245 Arabidopsis lyrata
AL1G39850 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 11578889-11579388 Arabidopsis lyrata
AL1G39850 0.5kb downstream 0.5kb downstream 2357   true scaffold_1: 11579389-11581745 Arabidopsis lyrata
AL1G39850 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 11581246-11581745 Arabidopsis lyrata
AL1G39850 1.0kb upstream 1.0kb upstream 2857   true scaffold_1: 11578389-11581245 Arabidopsis lyrata
AL1G39850 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 11578389-11579388 Arabidopsis lyrata
AL1G39850 1.0kb downstream 1.0kb downstream 2857   true scaffold_1: 11579389-11582245 Arabidopsis lyrata
AL1G39850 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 11581246-11582245 Arabidopsis lyrata
AL1G39850 2.0kb upstream 2.0kb upstream 3857   true scaffold_1: 11577389-11581245 Arabidopsis lyrata
AL1G39850 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 11577389-11579388 Arabidopsis lyrata
AL1G39850 2.0kb downstream 2.0kb downstream 3857   true scaffold_1: 11579389-11583245 Arabidopsis lyrata
AL1G39850 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 11581246-11583245 Arabidopsis lyrata
AL1G39850 5.0kb upstream 5.0kb upstream 6857   true scaffold_1: 11574389-11581245 Arabidopsis lyrata
AL1G39850 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 11574389-11579388 Arabidopsis lyrata
AL1G39850 5.0kb downstream 5.0kb downstream 6857   true scaffold_1: 11579389-11586245 Arabidopsis lyrata
AL1G39850 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 11581246-11586245 Arabidopsis lyrata
AL1G39850 10.0kb upstream 10.0kb upstream 11857   true scaffold_1: 11569389-11581245 Arabidopsis lyrata
AL1G39850 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 11569389-11579388 Arabidopsis lyrata
AL1G39850 10.0kb downstream 10.0kb downstream 11857   true scaffold_1: 11579389-11591245 Arabidopsis lyrata
AL1G39850 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 11581246-11591245 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380577 5261 Brassicaceae View MSA
123802796 5264 Brassicales-Malvales View MSA
124299962 5266 SBM View MSA
124247934 5268 Malvidae View MSA
124074382 5270 Rosid View MSA
123744253 5271 Pentapetalae View MSA
122788881 5272 Eudicot View MSA
122042493 5273 Angiosperm View MSA
121309978 5274 Embryophyte View MSA
123347592 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain