Gene : AL1G43750 A. lyrata v2.1

Defline:  (1 of 1) K01955 - carbamoyl-phosphate synthase large subunit (carB, CPA2) Genomic Order:  3162
Name:  ? AL1G43750 Secondary Identifier:  ? PAC:35934195

Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata ARGSYNBSUB-PWY Arabidopsis lyrata pathologic  
Alyrata ARGSYN-PWY Arabidopsis lyrata pathologic  
Alyrata CITRULBIO-PWY Arabidopsis lyrata pathologic  
Alyrata GLUTAMINDEG-PWY Arabidopsis lyrata pathologic  
Alyrata PWY0-162 Arabidopsis lyrata pathologic  
Alyrata PWY-4984 Arabidopsis lyrata pathologic  
Alyrata PWY-5686 Arabidopsis lyrata pathologic  
Alyrata PWY-7211 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G43750 0.5kb upstream 0.5kb upstream 4538   true scaffold_1: 13179606-13184143 Arabidopsis lyrata
AL1G43750 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 13179606-13180105 Arabidopsis lyrata
AL1G43750 0.5kb downstream 0.5kb downstream 4538   true scaffold_1: 13180106-13184643 Arabidopsis lyrata
AL1G43750 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 13184144-13184643 Arabidopsis lyrata
AL1G43750 1.0kb upstream 1.0kb upstream 5038   true scaffold_1: 13179106-13184143 Arabidopsis lyrata
AL1G43750 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 13179106-13180105 Arabidopsis lyrata
AL1G43750 1.0kb downstream 1.0kb downstream 5038   true scaffold_1: 13180106-13185143 Arabidopsis lyrata
AL1G43750 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 13184144-13185143 Arabidopsis lyrata
AL1G43750 2.0kb upstream 2.0kb upstream 6038   true scaffold_1: 13178106-13184143 Arabidopsis lyrata
AL1G43750 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 13178106-13180105 Arabidopsis lyrata
AL1G43750 2.0kb downstream 2.0kb downstream 6038   true scaffold_1: 13180106-13186143 Arabidopsis lyrata
AL1G43750 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 13184144-13186143 Arabidopsis lyrata
AL1G43750 5.0kb upstream 5.0kb upstream 9038   true scaffold_1: 13175106-13184143 Arabidopsis lyrata
AL1G43750 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 13175106-13180105 Arabidopsis lyrata
AL1G43750 5.0kb downstream 5.0kb downstream 9038   true scaffold_1: 13180106-13189143 Arabidopsis lyrata
AL1G43750 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 13184144-13189143 Arabidopsis lyrata
AL1G43750 10.0kb upstream 10.0kb upstream 14038   true scaffold_1: 13170106-13184143 Arabidopsis lyrata
AL1G43750 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 13170106-13180105 Arabidopsis lyrata
AL1G43750 10.0kb downstream 10.0kb downstream 14038   true scaffold_1: 13180106-13194143 Arabidopsis lyrata
AL1G43750 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 13184144-13194143 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363833 5261 Brassicaceae View MSA
123832524 5264 Brassicales-Malvales View MSA
124337507 5266 SBM View MSA
124239467 5268 Malvidae View MSA
124066420 5270 Rosid View MSA
123736766 5271 Pentapetalae View MSA
122791701 5272 Eudicot View MSA
122044632 5273 Angiosperm View MSA
121347318 5274 Embryophyte View MSA
123424226 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain