Gene : AL1G48280 A. lyrata v2.1

Defline:  (1 of 1) PTHR22835//PTHR22835:SF207 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  3564
Name:  ? AL1G48280 Secondary Identifier:  ? PAC:35930465

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata LIPAS-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G48280 0.5kb upstream 0.5kb upstream 2961   true scaffold_1: 15758652-15761612 Arabidopsis lyrata
AL1G48280 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 15758652-15759151 Arabidopsis lyrata
AL1G48280 0.5kb downstream 0.5kb downstream 2961   true scaffold_1: 15759152-15762112 Arabidopsis lyrata
AL1G48280 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 15761613-15762112 Arabidopsis lyrata
AL1G48280 1.0kb upstream 1.0kb upstream 3461   true scaffold_1: 15758152-15761612 Arabidopsis lyrata
AL1G48280 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 15758152-15759151 Arabidopsis lyrata
AL1G48280 1.0kb downstream 1.0kb downstream 3461   true scaffold_1: 15759152-15762612 Arabidopsis lyrata
AL1G48280 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 15761613-15762612 Arabidopsis lyrata
AL1G48280 2.0kb upstream 2.0kb upstream 4461   true scaffold_1: 15757152-15761612 Arabidopsis lyrata
AL1G48280 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 15757152-15759151 Arabidopsis lyrata
AL1G48280 2.0kb downstream 2.0kb downstream 4461   true scaffold_1: 15759152-15763612 Arabidopsis lyrata
AL1G48280 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 15761613-15763612 Arabidopsis lyrata
AL1G48280 5.0kb upstream 5.0kb upstream 7461   true scaffold_1: 15754152-15761612 Arabidopsis lyrata
AL1G48280 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 15754152-15759151 Arabidopsis lyrata
AL1G48280 5.0kb downstream 5.0kb downstream 7461   true scaffold_1: 15759152-15766612 Arabidopsis lyrata
AL1G48280 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 15761613-15766612 Arabidopsis lyrata
AL1G48280 10.0kb upstream 10.0kb upstream 12461   true scaffold_1: 15749152-15761612 Arabidopsis lyrata
AL1G48280 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 15749152-15759151 Arabidopsis lyrata
AL1G48280 10.0kb downstream 10.0kb downstream 12461   true scaffold_1: 15759152-15771612 Arabidopsis lyrata
AL1G48280 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 15761613-15771612 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374702 5261 Brassicaceae View MSA
123830494 5264 Brassicales-Malvales View MSA
124342316 5266 SBM View MSA
124238632 5268 Malvidae View MSA
124067838 5270 Rosid View MSA
123737678 5271 Pentapetalae View MSA
122786109 5272 Eudicot View MSA
122042489 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain