Gene : AL1G48590 A. lyrata v2.1

Defline:  (1 of 1) 2.7.1.32 - Choline kinase Genomic Order:  3591
Name:  ? AL1G48590 Secondary Identifier:  ? PAC:35934797

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-3385 Arabidopsis lyrata pathologic  
Alyrata PWY3O-450 Arabidopsis lyrata pathologic  
Alyrata PWY4FS-6 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G48590 0.5kb upstream 0.5kb upstream 2588   true scaffold_1: 15956203-15958790 Arabidopsis lyrata
AL1G48590 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 15956203-15956702 Arabidopsis lyrata
AL1G48590 0.5kb downstream 0.5kb downstream 2588   true scaffold_1: 15956703-15959290 Arabidopsis lyrata
AL1G48590 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 15958791-15959290 Arabidopsis lyrata
AL1G48590 1.0kb upstream 1.0kb upstream 3088   true scaffold_1: 15955703-15958790 Arabidopsis lyrata
AL1G48590 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 15955703-15956702 Arabidopsis lyrata
AL1G48590 1.0kb downstream 1.0kb downstream 3088   true scaffold_1: 15956703-15959790 Arabidopsis lyrata
AL1G48590 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 15958791-15959790 Arabidopsis lyrata
AL1G48590 2.0kb upstream 2.0kb upstream 4088   true scaffold_1: 15954703-15958790 Arabidopsis lyrata
AL1G48590 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 15954703-15956702 Arabidopsis lyrata
AL1G48590 2.0kb downstream 2.0kb downstream 4088   true scaffold_1: 15956703-15960790 Arabidopsis lyrata
AL1G48590 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 15958791-15960790 Arabidopsis lyrata
AL1G48590 5.0kb upstream 5.0kb upstream 7088   true scaffold_1: 15951703-15958790 Arabidopsis lyrata
AL1G48590 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 15951703-15956702 Arabidopsis lyrata
AL1G48590 5.0kb downstream 5.0kb downstream 7088   true scaffold_1: 15956703-15963790 Arabidopsis lyrata
AL1G48590 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 15958791-15963790 Arabidopsis lyrata
AL1G48590 10.0kb upstream 10.0kb upstream 12088   true scaffold_1: 15946703-15958790 Arabidopsis lyrata
AL1G48590 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 15946703-15956702 Arabidopsis lyrata
AL1G48590 10.0kb downstream 10.0kb downstream 12088   true scaffold_1: 15956703-15968790 Arabidopsis lyrata
AL1G48590 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 15958791-15968790 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372650 5261 Brassicaceae View MSA
123840519 5264 Brassicales-Malvales View MSA
124340711 5266 SBM View MSA
124247486 5268 Malvidae View MSA
124069180 5270 Rosid View MSA
123746925 5271 Pentapetalae View MSA
122797485 5272 Eudicot View MSA
122047896 5273 Angiosperm View MSA
121347088 5274 Embryophyte View MSA
123426626 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain