Gene : AL1G50580 A. lyrata v2.1

Defline:  (1 of 14) K06689 - ubiquitin-conjugating enzyme E2 D/E (UBE2D_E, UBC4, UBC5) Genomic Order:  3763
Name:  ? AL1G50580 Secondary Identifier:  ? PAC:35931046

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G50580 0.5kb upstream 0.5kb upstream 1661   true scaffold_1: 17522281-17523941 Arabidopsis lyrata
AL1G50580 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 17522281-17522780 Arabidopsis lyrata
AL1G50580 0.5kb downstream 0.5kb downstream 1661   true scaffold_1: 17522781-17524441 Arabidopsis lyrata
AL1G50580 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 17523942-17524441 Arabidopsis lyrata
AL1G50580 1.0kb upstream 1.0kb upstream 2161   true scaffold_1: 17521781-17523941 Arabidopsis lyrata
AL1G50580 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 17521781-17522780 Arabidopsis lyrata
AL1G50580 1.0kb downstream 1.0kb downstream 2161   true scaffold_1: 17522781-17524941 Arabidopsis lyrata
AL1G50580 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 17523942-17524941 Arabidopsis lyrata
AL1G50580 2.0kb upstream 2.0kb upstream 3161   true scaffold_1: 17520781-17523941 Arabidopsis lyrata
AL1G50580 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 17520781-17522780 Arabidopsis lyrata
AL1G50580 2.0kb downstream 2.0kb downstream 3161   true scaffold_1: 17522781-17525941 Arabidopsis lyrata
AL1G50580 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 17523942-17525941 Arabidopsis lyrata
AL1G50580 5.0kb upstream 5.0kb upstream 6161   true scaffold_1: 17517781-17523941 Arabidopsis lyrata
AL1G50580 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 17517781-17522780 Arabidopsis lyrata
AL1G50580 5.0kb downstream 5.0kb downstream 6161   true scaffold_1: 17522781-17528941 Arabidopsis lyrata
AL1G50580 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 17523942-17528941 Arabidopsis lyrata
AL1G50580 10.0kb upstream 10.0kb upstream 11161   true scaffold_1: 17512781-17523941 Arabidopsis lyrata
AL1G50580 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 17512781-17522780 Arabidopsis lyrata
AL1G50580 10.0kb downstream 10.0kb downstream 11161   true scaffold_1: 17522781-17533941 Arabidopsis lyrata
AL1G50580 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 17523942-17533941 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361845 5261 Brassicaceae View MSA
123798259 5264 Brassicales-Malvales View MSA
124295926 5266 SBM View MSA
124254787 5268 Malvidae View MSA
124074953 5270 Rosid View MSA
123751143 5271 Pentapetalae View MSA
122796795 5272 Eudicot View MSA
122049643 5273 Angiosperm View MSA
121351650 5274 Embryophyte View MSA
123428086 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain