Gene : AL1G49560 A. lyrata v2.1

Defline:  (1 of 1) PTHR31642:SF24 - HXXXD-TYPE ACYL-TRANSFERASE-LIKE PROTEIN Genomic Order:  3679
Name:  ? AL1G49560 Secondary Identifier:  ? PAC:35933699

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-4203 Arabidopsis lyrata pathologic  
Alyrata PWY-5835 Arabidopsis lyrata pathologic  
Alyrata PWY-6801 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G49560 0.5kb upstream 0.5kb upstream 1914   true scaffold_1: 16686686-16688599 Arabidopsis lyrata
AL1G49560 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 16686686-16687185 Arabidopsis lyrata
AL1G49560 0.5kb downstream 0.5kb downstream 1914   true scaffold_1: 16687186-16689099 Arabidopsis lyrata
AL1G49560 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 16688600-16689099 Arabidopsis lyrata
AL1G49560 1.0kb upstream 1.0kb upstream 2414   true scaffold_1: 16686186-16688599 Arabidopsis lyrata
AL1G49560 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 16686186-16687185 Arabidopsis lyrata
AL1G49560 1.0kb downstream 1.0kb downstream 2414   true scaffold_1: 16687186-16689599 Arabidopsis lyrata
AL1G49560 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 16688600-16689599 Arabidopsis lyrata
AL1G49560 2.0kb upstream 2.0kb upstream 3414   true scaffold_1: 16685186-16688599 Arabidopsis lyrata
AL1G49560 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 16685186-16687185 Arabidopsis lyrata
AL1G49560 2.0kb downstream 2.0kb downstream 3414   true scaffold_1: 16687186-16690599 Arabidopsis lyrata
AL1G49560 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 16688600-16690599 Arabidopsis lyrata
AL1G49560 5.0kb upstream 5.0kb upstream 6414   true scaffold_1: 16682186-16688599 Arabidopsis lyrata
AL1G49560 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 16682186-16687185 Arabidopsis lyrata
AL1G49560 5.0kb downstream 5.0kb downstream 6414   true scaffold_1: 16687186-16693599 Arabidopsis lyrata
AL1G49560 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 16688600-16693599 Arabidopsis lyrata
AL1G49560 10.0kb upstream 10.0kb upstream 11414   true scaffold_1: 16677186-16688599 Arabidopsis lyrata
AL1G49560 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 16677186-16687185 Arabidopsis lyrata
AL1G49560 10.0kb downstream 10.0kb downstream 11414   true scaffold_1: 16687186-16698599 Arabidopsis lyrata
AL1G49560 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 16688600-16698599 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369633 5261 Brassicaceae View MSA
123829524 5264 Brassicales-Malvales View MSA
124342757 5266 SBM View MSA
124242615 5268 Malvidae View MSA
124061522 5270 Rosid View MSA
123756556 5271 Pentapetalae View MSA
122797720 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain