Gene : AL1G49460 A. lyrata v2.1

Defline:  (1 of 1) PTHR13069:SF8 - 2-OXOGLUTARATE AND FE-DEPENDENT OXYGENASE FAMILY PROTEIN Genomic Order:  3671
Name:  ? AL1G49460 Secondary Identifier:  ? PAC:35930736

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6829 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G49460 0.5kb upstream 0.5kb upstream 2399   true scaffold_1: 16646714-16649112 Arabidopsis lyrata
AL1G49460 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 16646714-16647213 Arabidopsis lyrata
AL1G49460 0.5kb downstream 0.5kb downstream 2399   true scaffold_1: 16647214-16649612 Arabidopsis lyrata
AL1G49460 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 16649113-16649612 Arabidopsis lyrata
AL1G49460 1.0kb upstream 1.0kb upstream 2899   true scaffold_1: 16646214-16649112 Arabidopsis lyrata
AL1G49460 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 16646214-16647213 Arabidopsis lyrata
AL1G49460 1.0kb downstream 1.0kb downstream 2899   true scaffold_1: 16647214-16650112 Arabidopsis lyrata
AL1G49460 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 16649113-16650112 Arabidopsis lyrata
AL1G49460 2.0kb upstream 2.0kb upstream 3899   true scaffold_1: 16645214-16649112 Arabidopsis lyrata
AL1G49460 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 16645214-16647213 Arabidopsis lyrata
AL1G49460 2.0kb downstream 2.0kb downstream 3899   true scaffold_1: 16647214-16651112 Arabidopsis lyrata
AL1G49460 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 16649113-16651112 Arabidopsis lyrata
AL1G49460 5.0kb upstream 5.0kb upstream 6899   true scaffold_1: 16642214-16649112 Arabidopsis lyrata
AL1G49460 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 16642214-16647213 Arabidopsis lyrata
AL1G49460 5.0kb downstream 5.0kb downstream 6899   true scaffold_1: 16647214-16654112 Arabidopsis lyrata
AL1G49460 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 16649113-16654112 Arabidopsis lyrata
AL1G49460 10.0kb upstream 10.0kb upstream 11899   true scaffold_1: 16637214-16649112 Arabidopsis lyrata
AL1G49460 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 16637214-16647213 Arabidopsis lyrata
AL1G49460 10.0kb downstream 10.0kb downstream 11899   true scaffold_1: 16647214-16659112 Arabidopsis lyrata
AL1G49460 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 16649113-16659112 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368205 5261 Brassicaceae View MSA
123836574 5264 Brassicales-Malvales View MSA
124322185 5266 SBM View MSA
124242136 5268 Malvidae View MSA
124068599 5270 Rosid View MSA
123740892 5271 Pentapetalae View MSA
122793671 5272 Eudicot View MSA
122046991 5273 Angiosperm View MSA
121347521 5274 Embryophyte View MSA
123425237 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain