Gene : AL1G54670 A. lyrata v2.1

Defline:  (1 of 49) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  4109
Name:  ? AL1G54670 Secondary Identifier:  ? PAC:35932953

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G54670 0.5kb upstream 0.5kb upstream 3477   true scaffold_1: 24420266-24423742 Arabidopsis lyrata
AL1G54670 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 24420266-24420765 Arabidopsis lyrata
AL1G54670 0.5kb downstream 0.5kb downstream 3477   true scaffold_1: 24420766-24424242 Arabidopsis lyrata
AL1G54670 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 24423743-24424242 Arabidopsis lyrata
AL1G54670 1.0kb upstream 1.0kb upstream 3977   true scaffold_1: 24419766-24423742 Arabidopsis lyrata
AL1G54670 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 24419766-24420765 Arabidopsis lyrata
AL1G54670 1.0kb downstream 1.0kb downstream 3977   true scaffold_1: 24420766-24424742 Arabidopsis lyrata
AL1G54670 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 24423743-24424742 Arabidopsis lyrata
AL1G54670 2.0kb upstream 2.0kb upstream 4977   true scaffold_1: 24418766-24423742 Arabidopsis lyrata
AL1G54670 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 24418766-24420765 Arabidopsis lyrata
AL1G54670 2.0kb downstream 2.0kb downstream 4977   true scaffold_1: 24420766-24425742 Arabidopsis lyrata
AL1G54670 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 24423743-24425742 Arabidopsis lyrata
AL1G54670 5.0kb upstream 5.0kb upstream 7977   true scaffold_1: 24415766-24423742 Arabidopsis lyrata
AL1G54670 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 24415766-24420765 Arabidopsis lyrata
AL1G54670 5.0kb downstream 5.0kb downstream 7977   true scaffold_1: 24420766-24428742 Arabidopsis lyrata
AL1G54670 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 24423743-24428742 Arabidopsis lyrata
AL1G54670 10.0kb upstream 10.0kb upstream 12977   true scaffold_1: 24410766-24423742 Arabidopsis lyrata
AL1G54670 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 24410766-24420765 Arabidopsis lyrata
AL1G54670 10.0kb downstream 10.0kb downstream 12977   true scaffold_1: 24420766-24433742 Arabidopsis lyrata
AL1G54670 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 24423743-24433742 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372611 5261 Brassicaceae View MSA
123835792 5264 Brassicales-Malvales View MSA
124337988 5266 SBM View MSA
124242051 5268 Malvidae View MSA
124065487 5270 Rosid View MSA
123736627 5271 Pentapetalae View MSA
122795582 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain