Gene : AL1G52310 A. lyrata v2.1

Defline:  (1 of 1) 1.14.13.122 - Chlorophyllide-a oxygenase / Cholorophyll-b synthase Genomic Order:  3909
Name:  ? AL1G52310 Secondary Identifier:  ? PAC:35935745

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5068 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G52310 0.5kb upstream 0.5kb upstream 3583   true scaffold_1: 22640272-22643854 Arabidopsis lyrata
AL1G52310 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 22643355-22643854 Arabidopsis lyrata
AL1G52310 0.5kb downstream 0.5kb downstream 3583   true scaffold_1: 22639772-22643354 Arabidopsis lyrata
AL1G52310 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 22639772-22640271 Arabidopsis lyrata
AL1G52310 1.0kb upstream 1.0kb upstream 4083   true scaffold_1: 22640272-22644354 Arabidopsis lyrata
AL1G52310 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 22643355-22644354 Arabidopsis lyrata
AL1G52310 1.0kb downstream 1.0kb downstream 4083   true scaffold_1: 22639272-22643354 Arabidopsis lyrata
AL1G52310 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 22639272-22640271 Arabidopsis lyrata
AL1G52310 2.0kb upstream 2.0kb upstream 5083   true scaffold_1: 22640272-22645354 Arabidopsis lyrata
AL1G52310 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 22643355-22645354 Arabidopsis lyrata
AL1G52310 2.0kb downstream 2.0kb downstream 5083   true scaffold_1: 22638272-22643354 Arabidopsis lyrata
AL1G52310 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 22638272-22640271 Arabidopsis lyrata
AL1G52310 5.0kb upstream 5.0kb upstream 8083   true scaffold_1: 22640272-22648354 Arabidopsis lyrata
AL1G52310 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 22643355-22648354 Arabidopsis lyrata
AL1G52310 5.0kb downstream 5.0kb downstream 8083   true scaffold_1: 22635272-22643354 Arabidopsis lyrata
AL1G52310 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 22635272-22640271 Arabidopsis lyrata
AL1G52310 10.0kb upstream 10.0kb upstream 13083   true scaffold_1: 22640272-22653354 Arabidopsis lyrata
AL1G52310 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 22643355-22653354 Arabidopsis lyrata
AL1G52310 10.0kb downstream 10.0kb downstream 13083   true scaffold_1: 22630272-22643354 Arabidopsis lyrata
AL1G52310 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 22630272-22640271 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361363 5261 Brassicaceae View MSA
123838199 5264 Brassicales-Malvales View MSA
124342247 5266 SBM View MSA
124242720 5268 Malvidae View MSA
124067782 5270 Rosid View MSA
123744269 5271 Pentapetalae View MSA
122787506 5272 Eudicot View MSA
122048070 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121348979 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain