Gene : AL1G56590 A. lyrata v2.1

Defline:  (1 of 1) PTHR24096:SF134 - LONG CHAIN ACYL-COA SYNTHETASE 2 Genomic Order:  4288
Name:  ? AL1G56590 Secondary Identifier:  ? PAC:35931812

Sequence Feature Displayer

Ontology Annotation Displayer

13 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1121 Arabidopsis lyrata pathologic  
Alyrata PWY-321 Arabidopsis lyrata pathologic  
Alyrata PWY-5136 Arabidopsis lyrata pathologic  
Alyrata PWY-5143 Arabidopsis lyrata pathologic  
Alyrata PWY-5147 Arabidopsis lyrata pathologic  
Alyrata PWY-5156 Arabidopsis lyrata pathologic  
Alyrata PWY-561 Arabidopsis lyrata pathologic  
Alyrata PWY-5885 Arabidopsis lyrata pathologic  
Alyrata PWY-5971 Arabidopsis lyrata pathologic  
Alyrata PWY-5989 Arabidopsis lyrata pathologic  
Alyrata PWY66-389 Arabidopsis lyrata pathologic  
Alyrata PWY-6733 Arabidopsis lyrata pathologic  
Alyrata PWY-6803 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G56590 0.5kb upstream 0.5kb upstream 5753   true scaffold_1: 25487502-25493254 Arabidopsis lyrata
AL1G56590 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 25487502-25488001 Arabidopsis lyrata
AL1G56590 0.5kb downstream 0.5kb downstream 5753   true scaffold_1: 25488002-25493754 Arabidopsis lyrata
AL1G56590 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 25493255-25493754 Arabidopsis lyrata
AL1G56590 1.0kb upstream 1.0kb upstream 6253   true scaffold_1: 25487002-25493254 Arabidopsis lyrata
AL1G56590 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 25487002-25488001 Arabidopsis lyrata
AL1G56590 1.0kb downstream 1.0kb downstream 6253   true scaffold_1: 25488002-25494254 Arabidopsis lyrata
AL1G56590 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 25493255-25494254 Arabidopsis lyrata
AL1G56590 2.0kb upstream 2.0kb upstream 7253   true scaffold_1: 25486002-25493254 Arabidopsis lyrata
AL1G56590 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 25486002-25488001 Arabidopsis lyrata
AL1G56590 2.0kb downstream 2.0kb downstream 7253   true scaffold_1: 25488002-25495254 Arabidopsis lyrata
AL1G56590 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 25493255-25495254 Arabidopsis lyrata
AL1G56590 5.0kb upstream 5.0kb upstream 10253   true scaffold_1: 25483002-25493254 Arabidopsis lyrata
AL1G56590 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 25483002-25488001 Arabidopsis lyrata
AL1G56590 5.0kb downstream 5.0kb downstream 10253   true scaffold_1: 25488002-25498254 Arabidopsis lyrata
AL1G56590 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 25493255-25498254 Arabidopsis lyrata
AL1G56590 10.0kb upstream 10.0kb upstream 15253   true scaffold_1: 25478002-25493254 Arabidopsis lyrata
AL1G56590 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 25478002-25488001 Arabidopsis lyrata
AL1G56590 10.0kb downstream 10.0kb downstream 15253   true scaffold_1: 25488002-25503254 Arabidopsis lyrata
AL1G56590 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 25493255-25503254 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370491 5261 Brassicaceae View MSA
123830194 5264 Brassicales-Malvales View MSA
124339284 5266 SBM View MSA
124245132 5268 Malvidae View MSA
124069008 5270 Rosid View MSA
123751064 5271 Pentapetalae View MSA
122791747 5272 Eudicot View MSA
122047711 5273 Angiosperm View MSA
121350386 5274 Embryophyte View MSA
123426542 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain