Gene : AL1G57990 A. lyrata v2.1

Defline:  (1 of 3) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Genomic Order:  4405
Name:  ? AL1G57990 Secondary Identifier:  ? PAC:35930256

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G57990 0.5kb upstream 0.5kb upstream 2791   true scaffold_1: 26268935-26271725 Arabidopsis lyrata
AL1G57990 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 26268935-26269434 Arabidopsis lyrata
AL1G57990 0.5kb downstream 0.5kb downstream 2791   true scaffold_1: 26269435-26272225 Arabidopsis lyrata
AL1G57990 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 26271726-26272225 Arabidopsis lyrata
AL1G57990 1.0kb upstream 1.0kb upstream 3291   true scaffold_1: 26268435-26271725 Arabidopsis lyrata
AL1G57990 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 26268435-26269434 Arabidopsis lyrata
AL1G57990 1.0kb downstream 1.0kb downstream 3291   true scaffold_1: 26269435-26272725 Arabidopsis lyrata
AL1G57990 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 26271726-26272725 Arabidopsis lyrata
AL1G57990 2.0kb upstream 2.0kb upstream 4291   true scaffold_1: 26267435-26271725 Arabidopsis lyrata
AL1G57990 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 26267435-26269434 Arabidopsis lyrata
AL1G57990 2.0kb downstream 2.0kb downstream 4291   true scaffold_1: 26269435-26273725 Arabidopsis lyrata
AL1G57990 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 26271726-26273725 Arabidopsis lyrata
AL1G57990 5.0kb upstream 5.0kb upstream 7291   true scaffold_1: 26264435-26271725 Arabidopsis lyrata
AL1G57990 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 26264435-26269434 Arabidopsis lyrata
AL1G57990 5.0kb downstream 5.0kb downstream 7291   true scaffold_1: 26269435-26276725 Arabidopsis lyrata
AL1G57990 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 26271726-26276725 Arabidopsis lyrata
AL1G57990 10.0kb upstream 10.0kb upstream 12291   true scaffold_1: 26259435-26271725 Arabidopsis lyrata
AL1G57990 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 26259435-26269434 Arabidopsis lyrata
AL1G57990 10.0kb downstream 10.0kb downstream 12291   true scaffold_1: 26269435-26281725 Arabidopsis lyrata
AL1G57990 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 26271726-26281725 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375908 5261 Brassicaceae View MSA
123801082 5264 Brassicales-Malvales View MSA
124298423 5266 SBM View MSA
124150072 5268 Malvidae View MSA
124062824 5270 Rosid View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain