Gene : AL1G57980 A. lyrata v2.1

Defline:  (1 of 9) 3.2.2.22 - rRNA N-glycosylase / rRNA N-glycosidase Genomic Order:  4404
Name:  ? AL1G57980 Secondary Identifier:  ? PAC:35931657

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G57980 0.5kb upstream 0.5kb upstream 3323   true scaffold_1: 26262168-26265490 Arabidopsis lyrata
AL1G57980 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 26264991-26265490 Arabidopsis lyrata
AL1G57980 0.5kb downstream 0.5kb downstream 3323   true scaffold_1: 26261668-26264990 Arabidopsis lyrata
AL1G57980 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 26261668-26262167 Arabidopsis lyrata
AL1G57980 1.0kb upstream 1.0kb upstream 3823   true scaffold_1: 26262168-26265990 Arabidopsis lyrata
AL1G57980 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 26264991-26265990 Arabidopsis lyrata
AL1G57980 1.0kb downstream 1.0kb downstream 3823   true scaffold_1: 26261168-26264990 Arabidopsis lyrata
AL1G57980 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 26261168-26262167 Arabidopsis lyrata
AL1G57980 2.0kb upstream 2.0kb upstream 4823   true scaffold_1: 26262168-26266990 Arabidopsis lyrata
AL1G57980 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 26264991-26266990 Arabidopsis lyrata
AL1G57980 2.0kb downstream 2.0kb downstream 4823   true scaffold_1: 26260168-26264990 Arabidopsis lyrata
AL1G57980 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 26260168-26262167 Arabidopsis lyrata
AL1G57980 5.0kb upstream 5.0kb upstream 7823   true scaffold_1: 26262168-26269990 Arabidopsis lyrata
AL1G57980 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 26264991-26269990 Arabidopsis lyrata
AL1G57980 5.0kb downstream 5.0kb downstream 7823   true scaffold_1: 26257168-26264990 Arabidopsis lyrata
AL1G57980 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 26257168-26262167 Arabidopsis lyrata
AL1G57980 10.0kb upstream 10.0kb upstream 12823   true scaffold_1: 26262168-26274990 Arabidopsis lyrata
AL1G57980 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 26264991-26274990 Arabidopsis lyrata
AL1G57980 10.0kb downstream 10.0kb downstream 12823   true scaffold_1: 26252168-26264990 Arabidopsis lyrata
AL1G57980 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 26252168-26262167 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380325 5261 Brassicaceae View MSA
123802655 5264 Brassicales-Malvales View MSA
124349658 5266 SBM View MSA
124251807 5268 Malvidae View MSA
124073271 5270 Rosid View MSA
123752785 5271 Pentapetalae View MSA
122796250 5272 Eudicot View MSA
122050958 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain