Gene : AL1G63290 A. lyrata v2.1

Defline:  (1 of 1) PTHR23163:SF0 - E3 UBIQUITIN-PROTEIN LIGASE BRE1 Genomic Order:  4884
Name:  ? AL1G63290 Secondary Identifier:  ? PAC:35933132

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G63290 0.5kb upstream 0.5kb upstream 5994   true scaffold_1: 29193899-29199892 Arabidopsis lyrata
AL1G63290 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 29193899-29194398 Arabidopsis lyrata
AL1G63290 0.5kb downstream 0.5kb downstream 5994   true scaffold_1: 29194399-29200392 Arabidopsis lyrata
AL1G63290 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 29199893-29200392 Arabidopsis lyrata
AL1G63290 1.0kb upstream 1.0kb upstream 6494   true scaffold_1: 29193399-29199892 Arabidopsis lyrata
AL1G63290 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 29193399-29194398 Arabidopsis lyrata
AL1G63290 1.0kb downstream 1.0kb downstream 6494   true scaffold_1: 29194399-29200892 Arabidopsis lyrata
AL1G63290 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 29199893-29200892 Arabidopsis lyrata
AL1G63290 2.0kb upstream 2.0kb upstream 7494   true scaffold_1: 29192399-29199892 Arabidopsis lyrata
AL1G63290 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 29192399-29194398 Arabidopsis lyrata
AL1G63290 2.0kb downstream 2.0kb downstream 7494   true scaffold_1: 29194399-29201892 Arabidopsis lyrata
AL1G63290 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 29199893-29201892 Arabidopsis lyrata
AL1G63290 5.0kb upstream 5.0kb upstream 10494   true scaffold_1: 29189399-29199892 Arabidopsis lyrata
AL1G63290 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 29189399-29194398 Arabidopsis lyrata
AL1G63290 5.0kb downstream 5.0kb downstream 10494   true scaffold_1: 29194399-29204892 Arabidopsis lyrata
AL1G63290 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 29199893-29204892 Arabidopsis lyrata
AL1G63290 10.0kb upstream 10.0kb upstream 15494   true scaffold_1: 29184399-29199892 Arabidopsis lyrata
AL1G63290 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 29184399-29194398 Arabidopsis lyrata
AL1G63290 10.0kb downstream 10.0kb downstream 15494   true scaffold_1: 29194399-29209892 Arabidopsis lyrata
AL1G63290 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 29199893-29209892 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366402 5261 Brassicaceae View MSA
123830825 5264 Brassicales-Malvales View MSA
124341385 5266 SBM View MSA
124238716 5268 Malvidae View MSA
124068574 5270 Rosid View MSA
123753299 5271 Pentapetalae View MSA
122793673 5272 Eudicot View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain