Gene : AL2G11870 A. lyrata v2.1

Defline:  (1 of 4) K01783 - ribulose-phosphate 3-epimerase (rpe, RPE) Genomic Order:  171
Name:  ? AL2G11870 Secondary Identifier:  ? PAC:35944971

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata CALVIN-PWY Arabidopsis lyrata pathologic  
Alyrata NONOXIPENT-PWY Arabidopsis lyrata pathologic  
Alyrata PENTOSE-P-PWY Arabidopsis lyrata pathologic  
Alyrata PHOTOALL-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-5723 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL2G11870 0.5kb upstream 0.5kb upstream 2270   true scaffold_2: 927640-929909 Arabidopsis lyrata
AL2G11870 0.5kb upstream 0.5kb upstream 500   false scaffold_2: 927640-928139 Arabidopsis lyrata
AL2G11870 0.5kb downstream 0.5kb downstream 2270   true scaffold_2: 928140-930409 Arabidopsis lyrata
AL2G11870 0.5kb downstream 0.5kb downstream 500   false scaffold_2: 929910-930409 Arabidopsis lyrata
AL2G11870 1.0kb upstream 1.0kb upstream 2770   true scaffold_2: 927140-929909 Arabidopsis lyrata
AL2G11870 1.0kb upstream 1.0kb upstream 1000   false scaffold_2: 927140-928139 Arabidopsis lyrata
AL2G11870 1.0kb downstream 1.0kb downstream 2770   true scaffold_2: 928140-930909 Arabidopsis lyrata
AL2G11870 1.0kb downstream 1.0kb downstream 1000   false scaffold_2: 929910-930909 Arabidopsis lyrata
AL2G11870 2.0kb upstream 2.0kb upstream 3770   true scaffold_2: 926140-929909 Arabidopsis lyrata
AL2G11870 2.0kb upstream 2.0kb upstream 2000   false scaffold_2: 926140-928139 Arabidopsis lyrata
AL2G11870 2.0kb downstream 2.0kb downstream 3770   true scaffold_2: 928140-931909 Arabidopsis lyrata
AL2G11870 2.0kb downstream 2.0kb downstream 2000   false scaffold_2: 929910-931909 Arabidopsis lyrata
AL2G11870 5.0kb upstream 5.0kb upstream 6770   true scaffold_2: 923140-929909 Arabidopsis lyrata
AL2G11870 5.0kb upstream 5.0kb upstream 5000   false scaffold_2: 923140-928139 Arabidopsis lyrata
AL2G11870 5.0kb downstream 5.0kb downstream 6770   true scaffold_2: 928140-934909 Arabidopsis lyrata
AL2G11870 5.0kb downstream 5.0kb downstream 5000   false scaffold_2: 929910-934909 Arabidopsis lyrata
AL2G11870 10.0kb upstream 10.0kb upstream 11770   true scaffold_2: 918140-929909 Arabidopsis lyrata
AL2G11870 10.0kb upstream 10.0kb upstream 10000   false scaffold_2: 918140-928139 Arabidopsis lyrata
AL2G11870 10.0kb downstream 10.0kb downstream 11770   true scaffold_2: 928140-939909 Arabidopsis lyrata
AL2G11870 10.0kb downstream 10.0kb downstream 10000   false scaffold_2: 929910-939909 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377398 5261 Brassicaceae View MSA
123840154 5264 Brassicales-Malvales View MSA
124344961 5266 SBM View MSA
124252799 5268 Malvidae View MSA
124064705 5270 Rosid View MSA
123748809 5271 Pentapetalae View MSA
122786225 5272 Eudicot View MSA
122042554 5273 Angiosperm View MSA
121347255 5274 Embryophyte View MSA
123428302 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain