Gene : AL2G11140 A. lyrata v2.1

Defline:  (1 of 1) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  106
Name:  ? AL2G11140 Secondary Identifier:  ? PAC:35945677

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7560 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL2G11140 0.5kb upstream 0.5kb upstream 2287   true scaffold_2: 549995-552281 Arabidopsis lyrata
AL2G11140 0.5kb upstream 0.5kb upstream 500   false scaffold_2: 549995-550494 Arabidopsis lyrata
AL2G11140 0.5kb downstream 0.5kb downstream 2287   true scaffold_2: 550495-552781 Arabidopsis lyrata
AL2G11140 0.5kb downstream 0.5kb downstream 500   false scaffold_2: 552282-552781 Arabidopsis lyrata
AL2G11140 1.0kb upstream 1.0kb upstream 2787   true scaffold_2: 549495-552281 Arabidopsis lyrata
AL2G11140 1.0kb upstream 1.0kb upstream 1000   false scaffold_2: 549495-550494 Arabidopsis lyrata
AL2G11140 1.0kb downstream 1.0kb downstream 2787   true scaffold_2: 550495-553281 Arabidopsis lyrata
AL2G11140 1.0kb downstream 1.0kb downstream 1000   false scaffold_2: 552282-553281 Arabidopsis lyrata
AL2G11140 2.0kb upstream 2.0kb upstream 3787   true scaffold_2: 548495-552281 Arabidopsis lyrata
AL2G11140 2.0kb upstream 2.0kb upstream 2000   false scaffold_2: 548495-550494 Arabidopsis lyrata
AL2G11140 2.0kb downstream 2.0kb downstream 3787   true scaffold_2: 550495-554281 Arabidopsis lyrata
AL2G11140 2.0kb downstream 2.0kb downstream 2000   false scaffold_2: 552282-554281 Arabidopsis lyrata
AL2G11140 5.0kb upstream 5.0kb upstream 6787   true scaffold_2: 545495-552281 Arabidopsis lyrata
AL2G11140 5.0kb upstream 5.0kb upstream 5000   false scaffold_2: 545495-550494 Arabidopsis lyrata
AL2G11140 5.0kb downstream 5.0kb downstream 6787   true scaffold_2: 550495-557281 Arabidopsis lyrata
AL2G11140 5.0kb downstream 5.0kb downstream 5000   false scaffold_2: 552282-557281 Arabidopsis lyrata
AL2G11140 10.0kb upstream 10.0kb upstream 11787   true scaffold_2: 540495-552281 Arabidopsis lyrata
AL2G11140 10.0kb upstream 10.0kb upstream 10000   false scaffold_2: 540495-550494 Arabidopsis lyrata
AL2G11140 10.0kb downstream 10.0kb downstream 11787   true scaffold_2: 550495-562281 Arabidopsis lyrata
AL2G11140 10.0kb downstream 10.0kb downstream 10000   false scaffold_2: 552282-562281 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365152 5261 Brassicaceae View MSA
123835150 5264 Brassicales-Malvales View MSA
124346414 5266 SBM View MSA
124238483 5268 Malvidae View MSA
124062148 5270 Rosid View MSA
123737612 5271 Pentapetalae View MSA
122786124 5272 Eudicot View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain