Gene : AL2G17980 A. lyrata v2.1

Defline:  (1 of 3) K00765 - ATP phosphoribosyltransferase (hisG) Genomic Order:  714
Name:  ? AL2G17980 Secondary Identifier:  ? PAC:35945755

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata HISTSYN-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL2G17980 0.5kb upstream 0.5kb upstream 3754   true scaffold_2: 4393201-4396954 Arabidopsis lyrata
AL2G17980 0.5kb upstream 0.5kb upstream 500   false scaffold_2: 4396455-4396954 Arabidopsis lyrata
AL2G17980 0.5kb downstream 0.5kb downstream 3754   true scaffold_2: 4392701-4396454 Arabidopsis lyrata
AL2G17980 0.5kb downstream 0.5kb downstream 500   false scaffold_2: 4392701-4393200 Arabidopsis lyrata
AL2G17980 1.0kb upstream 1.0kb upstream 4254   true scaffold_2: 4393201-4397454 Arabidopsis lyrata
AL2G17980 1.0kb upstream 1.0kb upstream 1000   false scaffold_2: 4396455-4397454 Arabidopsis lyrata
AL2G17980 1.0kb downstream 1.0kb downstream 4254   true scaffold_2: 4392201-4396454 Arabidopsis lyrata
AL2G17980 1.0kb downstream 1.0kb downstream 1000   false scaffold_2: 4392201-4393200 Arabidopsis lyrata
AL2G17980 2.0kb upstream 2.0kb upstream 5254   true scaffold_2: 4393201-4398454 Arabidopsis lyrata
AL2G17980 2.0kb upstream 2.0kb upstream 2000   false scaffold_2: 4396455-4398454 Arabidopsis lyrata
AL2G17980 2.0kb downstream 2.0kb downstream 5254   true scaffold_2: 4391201-4396454 Arabidopsis lyrata
AL2G17980 2.0kb downstream 2.0kb downstream 2000   false scaffold_2: 4391201-4393200 Arabidopsis lyrata
AL2G17980 5.0kb upstream 5.0kb upstream 8254   true scaffold_2: 4393201-4401454 Arabidopsis lyrata
AL2G17980 5.0kb upstream 5.0kb upstream 5000   false scaffold_2: 4396455-4401454 Arabidopsis lyrata
AL2G17980 5.0kb downstream 5.0kb downstream 8254   true scaffold_2: 4388201-4396454 Arabidopsis lyrata
AL2G17980 5.0kb downstream 5.0kb downstream 5000   false scaffold_2: 4388201-4393200 Arabidopsis lyrata
AL2G17980 10.0kb upstream 10.0kb upstream 13254   true scaffold_2: 4393201-4406454 Arabidopsis lyrata
AL2G17980 10.0kb upstream 10.0kb upstream 10000   false scaffold_2: 4396455-4406454 Arabidopsis lyrata
AL2G17980 10.0kb downstream 10.0kb downstream 13254   true scaffold_2: 4383201-4396454 Arabidopsis lyrata
AL2G17980 10.0kb downstream 10.0kb downstream 10000   false scaffold_2: 4383201-4393200 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368034 5261 Brassicaceae View MSA
123840456 5264 Brassicales-Malvales View MSA
124322722 5266 SBM View MSA
124239271 5268 Malvidae View MSA
124065135 5270 Rosid View MSA
123747829 5271 Pentapetalae View MSA
122790103 5272 Eudicot View MSA
122042069 5273 Angiosperm View MSA
121345675 5274 Embryophyte View MSA
123427111 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain