Gene : AL2G21520 A. lyrata v2.1

Defline:  (1 of 1) PTHR23321//PTHR23321:SF33 - RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR // SUBFAMILY NOT NAMED Genomic Order:  985
Name:  ? AL2G21520 Secondary Identifier:  ? PAC:35946797

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata CALVIN-PWY Arabidopsis lyrata pathologic  
Alyrata PHOTOALL-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-5723 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL2G21520 0.5kb upstream 0.5kb upstream 2295   true scaffold_2: 9155542-9157836 Arabidopsis lyrata
AL2G21520 0.5kb upstream 0.5kb upstream 500   false scaffold_2: 9155542-9156041 Arabidopsis lyrata
AL2G21520 0.5kb downstream 0.5kb downstream 2295   true scaffold_2: 9156042-9158336 Arabidopsis lyrata
AL2G21520 0.5kb downstream 0.5kb downstream 500   false scaffold_2: 9157837-9158336 Arabidopsis lyrata
AL2G21520 1.0kb upstream 1.0kb upstream 2795   true scaffold_2: 9155042-9157836 Arabidopsis lyrata
AL2G21520 1.0kb upstream 1.0kb upstream 1000   false scaffold_2: 9155042-9156041 Arabidopsis lyrata
AL2G21520 1.0kb downstream 1.0kb downstream 2795   true scaffold_2: 9156042-9158836 Arabidopsis lyrata
AL2G21520 1.0kb downstream 1.0kb downstream 1000   false scaffold_2: 9157837-9158836 Arabidopsis lyrata
AL2G21520 2.0kb upstream 2.0kb upstream 3795   true scaffold_2: 9154042-9157836 Arabidopsis lyrata
AL2G21520 2.0kb upstream 2.0kb upstream 2000   false scaffold_2: 9154042-9156041 Arabidopsis lyrata
AL2G21520 2.0kb downstream 2.0kb downstream 3795   true scaffold_2: 9156042-9159836 Arabidopsis lyrata
AL2G21520 2.0kb downstream 2.0kb downstream 2000   false scaffold_2: 9157837-9159836 Arabidopsis lyrata
AL2G21520 5.0kb upstream 5.0kb upstream 6795   true scaffold_2: 9151042-9157836 Arabidopsis lyrata
AL2G21520 5.0kb upstream 5.0kb upstream 5000   false scaffold_2: 9151042-9156041 Arabidopsis lyrata
AL2G21520 5.0kb downstream 5.0kb downstream 6795   true scaffold_2: 9156042-9162836 Arabidopsis lyrata
AL2G21520 5.0kb downstream 5.0kb downstream 5000   false scaffold_2: 9157837-9162836 Arabidopsis lyrata
AL2G21520 10.0kb upstream 10.0kb upstream 11795   true scaffold_2: 9146042-9157836 Arabidopsis lyrata
AL2G21520 10.0kb upstream 10.0kb upstream 10000   false scaffold_2: 9146042-9156041 Arabidopsis lyrata
AL2G21520 10.0kb downstream 10.0kb downstream 11795   true scaffold_2: 9156042-9167836 Arabidopsis lyrata
AL2G21520 10.0kb downstream 10.0kb downstream 10000   false scaffold_2: 9157837-9167836 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379366 5261 Brassicaceae View MSA
123832933 5264 Brassicales-Malvales View MSA
124321833 5266 SBM View MSA
124244813 5268 Malvidae View MSA
124038153 5270 Rosid View MSA
123753610 5271 Pentapetalae View MSA
122775167 5272 Eudicot View MSA
122051023 5273 Angiosperm View MSA
121312251 5274 Embryophyte View MSA
123428195 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain