Gene : AL2G24640 A. lyrata v2.1

Defline:  (1 of 1) PTHR12843:SF5 - METHYLTRANSFERASE-LIKE PROTEIN 10 Genomic Order:  1244
Name:  ? AL2G24640 Secondary Identifier:  ? PAC:35946363

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5871 Arabidopsis lyrata pathologic  
Alyrata PWY-5872 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL2G24640 0.5kb upstream 0.5kb upstream 3359   true scaffold_2: 11599631-11602989 Arabidopsis lyrata
AL2G24640 0.5kb upstream 0.5kb upstream 500   false scaffold_2: 11602490-11602989 Arabidopsis lyrata
AL2G24640 0.5kb downstream 0.5kb downstream 3359   true scaffold_2: 11599131-11602489 Arabidopsis lyrata
AL2G24640 0.5kb downstream 0.5kb downstream 500   false scaffold_2: 11599131-11599630 Arabidopsis lyrata
AL2G24640 1.0kb upstream 1.0kb upstream 3859   true scaffold_2: 11599631-11603489 Arabidopsis lyrata
AL2G24640 1.0kb upstream 1.0kb upstream 1000   false scaffold_2: 11602490-11603489 Arabidopsis lyrata
AL2G24640 1.0kb downstream 1.0kb downstream 3859   true scaffold_2: 11598631-11602489 Arabidopsis lyrata
AL2G24640 1.0kb downstream 1.0kb downstream 1000   false scaffold_2: 11598631-11599630 Arabidopsis lyrata
AL2G24640 2.0kb upstream 2.0kb upstream 4859   true scaffold_2: 11599631-11604489 Arabidopsis lyrata
AL2G24640 2.0kb upstream 2.0kb upstream 2000   false scaffold_2: 11602490-11604489 Arabidopsis lyrata
AL2G24640 2.0kb downstream 2.0kb downstream 4859   true scaffold_2: 11597631-11602489 Arabidopsis lyrata
AL2G24640 2.0kb downstream 2.0kb downstream 2000   false scaffold_2: 11597631-11599630 Arabidopsis lyrata
AL2G24640 5.0kb upstream 5.0kb upstream 7859   true scaffold_2: 11599631-11607489 Arabidopsis lyrata
AL2G24640 5.0kb upstream 5.0kb upstream 5000   false scaffold_2: 11602490-11607489 Arabidopsis lyrata
AL2G24640 5.0kb downstream 5.0kb downstream 7859   true scaffold_2: 11594631-11602489 Arabidopsis lyrata
AL2G24640 5.0kb downstream 5.0kb downstream 5000   false scaffold_2: 11594631-11599630 Arabidopsis lyrata
AL2G24640 10.0kb upstream 10.0kb upstream 12859   true scaffold_2: 11599631-11612489 Arabidopsis lyrata
AL2G24640 10.0kb upstream 10.0kb upstream 10000   false scaffold_2: 11602490-11612489 Arabidopsis lyrata
AL2G24640 10.0kb downstream 10.0kb downstream 12859   true scaffold_2: 11589631-11602489 Arabidopsis lyrata
AL2G24640 10.0kb downstream 10.0kb downstream 10000   false scaffold_2: 11589631-11599630 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363883 5261 Brassicaceae View MSA
123830048 5264 Brassicales-Malvales View MSA
124346626 5266 SBM View MSA
124241228 5268 Malvidae View MSA
124065361 5270 Rosid View MSA
123737741 5271 Pentapetalae View MSA
122789553 5272 Eudicot View MSA
122041744 5273 Angiosperm View MSA
121347606 5274 Embryophyte View MSA
123380579 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain