Gene : AL2G25440 A. lyrata v2.1

Defline:  (1 of 1) 5.3.99.9 - Neoxanthin synthase / NSY Genomic Order:  1319
Name:  ? AL2G25440 Secondary Identifier:  ? PAC:35944997

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6809 Arabidopsis lyrata pathologic  
Alyrata PWY-695 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL2G25440 0.5kb upstream 0.5kb upstream 2094   true scaffold_2: 12120132-12122225 Arabidopsis lyrata
AL2G25440 0.5kb upstream 0.5kb upstream 500   false scaffold_2: 12121726-12122225 Arabidopsis lyrata
AL2G25440 0.5kb downstream 0.5kb downstream 2094   true scaffold_2: 12119632-12121725 Arabidopsis lyrata
AL2G25440 0.5kb downstream 0.5kb downstream 500   false scaffold_2: 12119632-12120131 Arabidopsis lyrata
AL2G25440 1.0kb upstream 1.0kb upstream 2594   true scaffold_2: 12120132-12122725 Arabidopsis lyrata
AL2G25440 1.0kb upstream 1.0kb upstream 1000   false scaffold_2: 12121726-12122725 Arabidopsis lyrata
AL2G25440 1.0kb downstream 1.0kb downstream 2594   true scaffold_2: 12119132-12121725 Arabidopsis lyrata
AL2G25440 1.0kb downstream 1.0kb downstream 1000   false scaffold_2: 12119132-12120131 Arabidopsis lyrata
AL2G25440 2.0kb upstream 2.0kb upstream 3594   true scaffold_2: 12120132-12123725 Arabidopsis lyrata
AL2G25440 2.0kb upstream 2.0kb upstream 2000   false scaffold_2: 12121726-12123725 Arabidopsis lyrata
AL2G25440 2.0kb downstream 2.0kb downstream 3594   true scaffold_2: 12118132-12121725 Arabidopsis lyrata
AL2G25440 2.0kb downstream 2.0kb downstream 2000   false scaffold_2: 12118132-12120131 Arabidopsis lyrata
AL2G25440 5.0kb upstream 5.0kb upstream 6594   true scaffold_2: 12120132-12126725 Arabidopsis lyrata
AL2G25440 5.0kb upstream 5.0kb upstream 5000   false scaffold_2: 12121726-12126725 Arabidopsis lyrata
AL2G25440 5.0kb downstream 5.0kb downstream 6594   true scaffold_2: 12115132-12121725 Arabidopsis lyrata
AL2G25440 5.0kb downstream 5.0kb downstream 5000   false scaffold_2: 12115132-12120131 Arabidopsis lyrata
AL2G25440 10.0kb upstream 10.0kb upstream 11594   true scaffold_2: 12120132-12131725 Arabidopsis lyrata
AL2G25440 10.0kb upstream 10.0kb upstream 10000   false scaffold_2: 12121726-12131725 Arabidopsis lyrata
AL2G25440 10.0kb downstream 10.0kb downstream 11594   true scaffold_2: 12110132-12121725 Arabidopsis lyrata
AL2G25440 10.0kb downstream 10.0kb downstream 10000   false scaffold_2: 12110132-12120131 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362178 5261 Brassicaceae View MSA
123832925 5264 Brassicales-Malvales View MSA
124339377 5266 SBM View MSA
124248470 5268 Malvidae View MSA
124062178 5270 Rosid View MSA
123748588 5271 Pentapetalae View MSA
122790006 5272 Eudicot View MSA
122047205 5273 Angiosperm View MSA
121346000 5274 Embryophyte View MSA
123425892 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain