Gene : AL2G40170 A. lyrata v2.1

Defline:  (1 of 3) K00134 - glyceraldehyde 3-phosphate dehydrogenase (GAPDH, gapA) Genomic Order:  2696
Name:  ? AL2G40170 Secondary Identifier:  ? PAC:35946209

Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata ANAEROFRUCAT-PWY Arabidopsis lyrata pathologic  
Alyrata ANAGLYCOLYSIS-PWY Arabidopsis lyrata pathologic  
Alyrata GLUCONEO-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-1042 Arabidopsis lyrata pathologic  
Alyrata PWY-5464 Arabidopsis lyrata pathologic  
Alyrata PWY66-399 Arabidopsis lyrata pathologic  
Alyrata SUCSYN-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL2G40170 0.5kb upstream 0.5kb upstream 4457   true scaffold_2: 18710447-18714903 Arabidopsis lyrata
AL2G40170 0.5kb upstream 0.5kb upstream 500   false scaffold_2: 18714404-18714903 Arabidopsis lyrata
AL2G40170 0.5kb downstream 0.5kb downstream 4457   true scaffold_2: 18709947-18714403 Arabidopsis lyrata
AL2G40170 0.5kb downstream 0.5kb downstream 500   false scaffold_2: 18709947-18710446 Arabidopsis lyrata
AL2G40170 1.0kb upstream 1.0kb upstream 4957   true scaffold_2: 18710447-18715403 Arabidopsis lyrata
AL2G40170 1.0kb upstream 1.0kb upstream 1000   false scaffold_2: 18714404-18715403 Arabidopsis lyrata
AL2G40170 1.0kb downstream 1.0kb downstream 4957   true scaffold_2: 18709447-18714403 Arabidopsis lyrata
AL2G40170 1.0kb downstream 1.0kb downstream 1000   false scaffold_2: 18709447-18710446 Arabidopsis lyrata
AL2G40170 2.0kb upstream 2.0kb upstream 5957   true scaffold_2: 18710447-18716403 Arabidopsis lyrata
AL2G40170 2.0kb upstream 2.0kb upstream 2000   false scaffold_2: 18714404-18716403 Arabidopsis lyrata
AL2G40170 2.0kb downstream 2.0kb downstream 5957   true scaffold_2: 18708447-18714403 Arabidopsis lyrata
AL2G40170 2.0kb downstream 2.0kb downstream 2000   false scaffold_2: 18708447-18710446 Arabidopsis lyrata
AL2G40170 5.0kb upstream 5.0kb upstream 8957   true scaffold_2: 18710447-18719403 Arabidopsis lyrata
AL2G40170 5.0kb upstream 5.0kb upstream 5000   false scaffold_2: 18714404-18719403 Arabidopsis lyrata
AL2G40170 5.0kb downstream 5.0kb downstream 8957   true scaffold_2: 18705447-18714403 Arabidopsis lyrata
AL2G40170 5.0kb downstream 5.0kb downstream 5000   false scaffold_2: 18705447-18710446 Arabidopsis lyrata
AL2G40170 10.0kb upstream 10.0kb upstream 13957   true scaffold_2: 18710447-18724403 Arabidopsis lyrata
AL2G40170 10.0kb upstream 10.0kb upstream 10000   false scaffold_2: 18714404-18724403 Arabidopsis lyrata
AL2G40170 10.0kb downstream 10.0kb downstream 13957   true scaffold_2: 18700447-18714403 Arabidopsis lyrata
AL2G40170 10.0kb downstream 10.0kb downstream 10000   false scaffold_2: 18700447-18710446 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360687 5261 Brassicaceae View MSA
123836882 5264 Brassicales-Malvales View MSA
124346127 5266 SBM View MSA
124243370 5268 Malvidae View MSA
124063810 5270 Rosid View MSA
123738168 5271 Pentapetalae View MSA
122792653 5272 Eudicot View MSA
122042179 5273 Angiosperm View MSA
121345581 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain