Gene : AL3G11050 A. lyrata v2.1

Defline:  (1 of 3) PTHR31235:SF17 - PEROXIDASE 27-RELATED Genomic Order:  102
Name:  ? AL3G11050 Secondary Identifier:  ? PAC:35942318

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5466 Arabidopsis lyrata pathologic  
Alyrata PWY-7214 Arabidopsis lyrata pathologic  
Alyrata PWY-7445 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G11050 0.5kb upstream 0.5kb upstream 1968   true scaffold_3: 358460-360427 Arabidopsis lyrata
AL3G11050 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 358460-358959 Arabidopsis lyrata
AL3G11050 0.5kb downstream 0.5kb downstream 1968   true scaffold_3: 358960-360927 Arabidopsis lyrata
AL3G11050 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 360428-360927 Arabidopsis lyrata
AL3G11050 1.0kb upstream 1.0kb upstream 2468   true scaffold_3: 357960-360427 Arabidopsis lyrata
AL3G11050 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 357960-358959 Arabidopsis lyrata
AL3G11050 1.0kb downstream 1.0kb downstream 2468   true scaffold_3: 358960-361427 Arabidopsis lyrata
AL3G11050 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 360428-361427 Arabidopsis lyrata
AL3G11050 2.0kb upstream 2.0kb upstream 3468   true scaffold_3: 356960-360427 Arabidopsis lyrata
AL3G11050 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 356960-358959 Arabidopsis lyrata
AL3G11050 2.0kb downstream 2.0kb downstream 3468   true scaffold_3: 358960-362427 Arabidopsis lyrata
AL3G11050 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 360428-362427 Arabidopsis lyrata
AL3G11050 5.0kb upstream 5.0kb upstream 6468   true scaffold_3: 353960-360427 Arabidopsis lyrata
AL3G11050 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 353960-358959 Arabidopsis lyrata
AL3G11050 5.0kb downstream 5.0kb downstream 6468   true scaffold_3: 358960-365427 Arabidopsis lyrata
AL3G11050 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 360428-365427 Arabidopsis lyrata
AL3G11050 10.0kb upstream 10.0kb upstream 11468   true scaffold_3: 348960-360427 Arabidopsis lyrata
AL3G11050 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 348960-358959 Arabidopsis lyrata
AL3G11050 10.0kb downstream 10.0kb downstream 11468   true scaffold_3: 358960-370427 Arabidopsis lyrata
AL3G11050 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 360428-370427 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371938 5261 Brassicaceae View MSA
123841316 5264 Brassicales-Malvales View MSA
124340691 5266 SBM View MSA
124241136 5268 Malvidae View MSA
124071148 5270 Rosid View MSA
123748177 5271 Pentapetalae View MSA
122794454 5272 Eudicot View MSA
122051577 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain