Gene : AL3G11070 A. lyrata v2.1

Defline:  (1 of 1) PTHR12526:SF337 - STARCH SYNTHASE 2, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  104
Name:  ? AL3G11070 Secondary Identifier:  ? PAC:35940354

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata GLYCOGENSYNTH-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-622 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G11070 0.5kb upstream 0.5kb upstream 4115   true scaffold_3: 361260-365374 Arabidopsis lyrata
AL3G11070 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 361260-361759 Arabidopsis lyrata
AL3G11070 0.5kb downstream 0.5kb downstream 4115   true scaffold_3: 361760-365874 Arabidopsis lyrata
AL3G11070 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 365375-365874 Arabidopsis lyrata
AL3G11070 1.0kb upstream 1.0kb upstream 4615   true scaffold_3: 360760-365374 Arabidopsis lyrata
AL3G11070 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 360760-361759 Arabidopsis lyrata
AL3G11070 1.0kb downstream 1.0kb downstream 4615   true scaffold_3: 361760-366374 Arabidopsis lyrata
AL3G11070 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 365375-366374 Arabidopsis lyrata
AL3G11070 2.0kb upstream 2.0kb upstream 5615   true scaffold_3: 359760-365374 Arabidopsis lyrata
AL3G11070 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 359760-361759 Arabidopsis lyrata
AL3G11070 2.0kb downstream 2.0kb downstream 5615   true scaffold_3: 361760-367374 Arabidopsis lyrata
AL3G11070 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 365375-367374 Arabidopsis lyrata
AL3G11070 5.0kb upstream 5.0kb upstream 8615   true scaffold_3: 356760-365374 Arabidopsis lyrata
AL3G11070 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 356760-361759 Arabidopsis lyrata
AL3G11070 5.0kb downstream 5.0kb downstream 8615   true scaffold_3: 361760-370374 Arabidopsis lyrata
AL3G11070 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 365375-370374 Arabidopsis lyrata
AL3G11070 10.0kb upstream 10.0kb upstream 13615   true scaffold_3: 351760-365374 Arabidopsis lyrata
AL3G11070 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 351760-361759 Arabidopsis lyrata
AL3G11070 10.0kb downstream 10.0kb downstream 13615   true scaffold_3: 361760-375374 Arabidopsis lyrata
AL3G11070 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 365375-375374 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367059 5261 Brassicaceae View MSA
123831614 5264 Brassicales-Malvales View MSA
124342680 5266 SBM View MSA
124239099 5268 Malvidae View MSA
124066587 5270 Rosid View MSA
123744003 5271 Pentapetalae View MSA
122787814 5272 Eudicot View MSA
122042262 5273 Angiosperm View MSA
121347324 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain