Gene : AL3G12700 A. lyrata v2.1

Defline:  (1 of 1) K11352 - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12 (NDUFA12) Genomic Order:  258
Name:  ? AL3G12700 Secondary Identifier:  ? PAC:35940401

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-3781 Arabidopsis lyrata pathologic  
Alyrata PWY-4302 Arabidopsis lyrata pathologic  
Alyrata PWY-5083 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G12700 0.5kb upstream 0.5kb upstream 2489   true scaffold_3: 919849-922337 Arabidopsis lyrata
AL3G12700 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 921838-922337 Arabidopsis lyrata
AL3G12700 0.5kb downstream 0.5kb downstream 2489   true scaffold_3: 919349-921837 Arabidopsis lyrata
AL3G12700 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 919349-919848 Arabidopsis lyrata
AL3G12700 1.0kb upstream 1.0kb upstream 2989   true scaffold_3: 919849-922837 Arabidopsis lyrata
AL3G12700 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 921838-922837 Arabidopsis lyrata
AL3G12700 1.0kb downstream 1.0kb downstream 2989   true scaffold_3: 918849-921837 Arabidopsis lyrata
AL3G12700 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 918849-919848 Arabidopsis lyrata
AL3G12700 2.0kb upstream 2.0kb upstream 3989   true scaffold_3: 919849-923837 Arabidopsis lyrata
AL3G12700 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 921838-923837 Arabidopsis lyrata
AL3G12700 2.0kb downstream 2.0kb downstream 3989   true scaffold_3: 917849-921837 Arabidopsis lyrata
AL3G12700 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 917849-919848 Arabidopsis lyrata
AL3G12700 5.0kb upstream 5.0kb upstream 6989   true scaffold_3: 919849-926837 Arabidopsis lyrata
AL3G12700 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 921838-926837 Arabidopsis lyrata
AL3G12700 5.0kb downstream 5.0kb downstream 6989   true scaffold_3: 914849-921837 Arabidopsis lyrata
AL3G12700 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 914849-919848 Arabidopsis lyrata
AL3G12700 10.0kb upstream 10.0kb upstream 11989   true scaffold_3: 919849-931837 Arabidopsis lyrata
AL3G12700 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 921838-931837 Arabidopsis lyrata
AL3G12700 10.0kb downstream 10.0kb downstream 11989   true scaffold_3: 909849-921837 Arabidopsis lyrata
AL3G12700 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 909849-919848 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361999 5261 Brassicaceae View MSA
123830822 5264 Brassicales-Malvales View MSA
124340873 5266 SBM View MSA
124238715 5268 Malvidae View MSA
124065378 5270 Rosid View MSA
123737211 5271 Pentapetalae View MSA
122787293 5272 Eudicot View MSA
122043638 5273 Angiosperm View MSA
121345011 5274 Embryophyte View MSA
123426349 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain