Gene : AL3G19190 A. lyrata v2.1

Defline:  (1 of 3) PTHR31375:SF37 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Genomic Order:  875
Name:  ? AL3G19190 Secondary Identifier:  ? PAC:35942604

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G19190 0.5kb upstream 0.5kb upstream 2137   true scaffold_3: 3277534-3279670 Arabidopsis lyrata
AL3G19190 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 3279171-3279670 Arabidopsis lyrata
AL3G19190 0.5kb downstream 0.5kb downstream 2137   true scaffold_3: 3277034-3279170 Arabidopsis lyrata
AL3G19190 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 3277034-3277533 Arabidopsis lyrata
AL3G19190 1.0kb upstream 1.0kb upstream 2637   true scaffold_3: 3277534-3280170 Arabidopsis lyrata
AL3G19190 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 3279171-3280170 Arabidopsis lyrata
AL3G19190 1.0kb downstream 1.0kb downstream 2637   true scaffold_3: 3276534-3279170 Arabidopsis lyrata
AL3G19190 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 3276534-3277533 Arabidopsis lyrata
AL3G19190 2.0kb upstream 2.0kb upstream 3637   true scaffold_3: 3277534-3281170 Arabidopsis lyrata
AL3G19190 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 3279171-3281170 Arabidopsis lyrata
AL3G19190 2.0kb downstream 2.0kb downstream 3637   true scaffold_3: 3275534-3279170 Arabidopsis lyrata
AL3G19190 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 3275534-3277533 Arabidopsis lyrata
AL3G19190 5.0kb upstream 5.0kb upstream 6637   true scaffold_3: 3277534-3284170 Arabidopsis lyrata
AL3G19190 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 3279171-3284170 Arabidopsis lyrata
AL3G19190 5.0kb downstream 5.0kb downstream 6637   true scaffold_3: 3272534-3279170 Arabidopsis lyrata
AL3G19190 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 3272534-3277533 Arabidopsis lyrata
AL3G19190 10.0kb upstream 10.0kb upstream 11637   true scaffold_3: 3277534-3289170 Arabidopsis lyrata
AL3G19190 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 3279171-3289170 Arabidopsis lyrata
AL3G19190 10.0kb downstream 10.0kb downstream 11637   true scaffold_3: 3267534-3279170 Arabidopsis lyrata
AL3G19190 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 3267534-3277533 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373108 5261 Brassicaceae View MSA
123841196 5264 Brassicales-Malvales View MSA
124349703 5266 SBM View MSA
124252748 5268 Malvidae View MSA
124074380 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain