Gene : AL3G19490 A. lyrata v2.1

Defline:  (1 of 7) K05857 - phosphatidylinositol phospholipase C, delta (PLCD) Genomic Order:  903
Name:  ? AL3G19490 Secondary Identifier:  ? PAC:35941580

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata LIPASYN-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-6351 Arabidopsis lyrata pathologic  
Alyrata PWY-6367 Arabidopsis lyrata pathologic  
Alyrata PWY-7039 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G19490 0.5kb upstream 0.5kb upstream 3957   true scaffold_3: 3371623-3375579 Arabidopsis lyrata
AL3G19490 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 3375080-3375579 Arabidopsis lyrata
AL3G19490 0.5kb downstream 0.5kb downstream 3957   true scaffold_3: 3371123-3375079 Arabidopsis lyrata
AL3G19490 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 3371123-3371622 Arabidopsis lyrata
AL3G19490 1.0kb upstream 1.0kb upstream 4457   true scaffold_3: 3371623-3376079 Arabidopsis lyrata
AL3G19490 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 3375080-3376079 Arabidopsis lyrata
AL3G19490 1.0kb downstream 1.0kb downstream 4457   true scaffold_3: 3370623-3375079 Arabidopsis lyrata
AL3G19490 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 3370623-3371622 Arabidopsis lyrata
AL3G19490 2.0kb upstream 2.0kb upstream 5457   true scaffold_3: 3371623-3377079 Arabidopsis lyrata
AL3G19490 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 3375080-3377079 Arabidopsis lyrata
AL3G19490 2.0kb downstream 2.0kb downstream 5457   true scaffold_3: 3369623-3375079 Arabidopsis lyrata
AL3G19490 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 3369623-3371622 Arabidopsis lyrata
AL3G19490 5.0kb upstream 5.0kb upstream 8457   true scaffold_3: 3371623-3380079 Arabidopsis lyrata
AL3G19490 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 3375080-3380079 Arabidopsis lyrata
AL3G19490 5.0kb downstream 5.0kb downstream 8457   true scaffold_3: 3366623-3375079 Arabidopsis lyrata
AL3G19490 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 3366623-3371622 Arabidopsis lyrata
AL3G19490 10.0kb upstream 10.0kb upstream 13457   true scaffold_3: 3371623-3385079 Arabidopsis lyrata
AL3G19490 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 3375080-3385079 Arabidopsis lyrata
AL3G19490 10.0kb downstream 10.0kb downstream 13457   true scaffold_3: 3361623-3375079 Arabidopsis lyrata
AL3G19490 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 3361623-3371622 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376253 5261 Brassicaceae View MSA
123827505 5264 Brassicales-Malvales View MSA
124337245 5266 SBM View MSA
124244278 5268 Malvidae View MSA
124061623 5270 Rosid View MSA
123747750 5271 Pentapetalae View MSA
122786994 5272 Eudicot View MSA
122046719 5273 Angiosperm View MSA
121351735 5274 Embryophyte View MSA
123428200 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain