Gene : AL3G18410 A. lyrata v2.1

Defline:  (1 of 1) PTHR12741:SF12 - CALLOSE SYNTHASE 9 Genomic Order:  799
Name:  ? AL3G18410 Secondary Identifier:  ? PAC:35940336

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6773 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G18410 0.5kb upstream 0.5kb upstream 14986   true scaffold_3: 3009563-3024548 Arabidopsis lyrata
AL3G18410 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 3024049-3024548 Arabidopsis lyrata
AL3G18410 0.5kb downstream 0.5kb downstream 14986   true scaffold_3: 3009063-3024048 Arabidopsis lyrata
AL3G18410 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 3009063-3009562 Arabidopsis lyrata
AL3G18410 1.0kb upstream 1.0kb upstream 15486   true scaffold_3: 3009563-3025048 Arabidopsis lyrata
AL3G18410 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 3024049-3025048 Arabidopsis lyrata
AL3G18410 1.0kb downstream 1.0kb downstream 15486   true scaffold_3: 3008563-3024048 Arabidopsis lyrata
AL3G18410 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 3008563-3009562 Arabidopsis lyrata
AL3G18410 2.0kb upstream 2.0kb upstream 16486   true scaffold_3: 3009563-3026048 Arabidopsis lyrata
AL3G18410 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 3024049-3026048 Arabidopsis lyrata
AL3G18410 2.0kb downstream 2.0kb downstream 16486   true scaffold_3: 3007563-3024048 Arabidopsis lyrata
AL3G18410 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 3007563-3009562 Arabidopsis lyrata
AL3G18410 5.0kb upstream 5.0kb upstream 19486   true scaffold_3: 3009563-3029048 Arabidopsis lyrata
AL3G18410 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 3024049-3029048 Arabidopsis lyrata
AL3G18410 5.0kb downstream 5.0kb downstream 19486   true scaffold_3: 3004563-3024048 Arabidopsis lyrata
AL3G18410 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 3004563-3009562 Arabidopsis lyrata
AL3G18410 10.0kb upstream 10.0kb upstream 24486   true scaffold_3: 3009563-3034048 Arabidopsis lyrata
AL3G18410 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 3024049-3034048 Arabidopsis lyrata
AL3G18410 10.0kb downstream 10.0kb downstream 24486   true scaffold_3: 2999563-3024048 Arabidopsis lyrata
AL3G18410 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 2999563-3009562 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363875 5261 Brassicaceae View MSA
123830920 5264 Brassicales-Malvales View MSA
124350687 5266 SBM View MSA
124241987 5268 Malvidae View MSA
124064291 5270 Rosid View MSA
123749286 5271 Pentapetalae View MSA
122796440 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain