Gene : AL3G18980 A. lyrata v2.1

Defline:  (1 of 1) PTHR11062//PTHR11062:SF90 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED // SUBFAMILY NOT NAMED Genomic Order:  854
Name:  ? AL3G18980 Secondary Identifier:  ? PAC:35944293

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5980 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G18980 0.5kb upstream 0.5kb upstream 2414   true scaffold_3: 3209067-3211480 Arabidopsis lyrata
AL3G18980 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 3210981-3211480 Arabidopsis lyrata
AL3G18980 0.5kb downstream 0.5kb downstream 2414   true scaffold_3: 3208567-3210980 Arabidopsis lyrata
AL3G18980 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 3208567-3209066 Arabidopsis lyrata
AL3G18980 1.0kb upstream 1.0kb upstream 2914   true scaffold_3: 3209067-3211980 Arabidopsis lyrata
AL3G18980 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 3210981-3211980 Arabidopsis lyrata
AL3G18980 1.0kb downstream 1.0kb downstream 2914   true scaffold_3: 3208067-3210980 Arabidopsis lyrata
AL3G18980 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 3208067-3209066 Arabidopsis lyrata
AL3G18980 2.0kb upstream 2.0kb upstream 3914   true scaffold_3: 3209067-3212980 Arabidopsis lyrata
AL3G18980 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 3210981-3212980 Arabidopsis lyrata
AL3G18980 2.0kb downstream 2.0kb downstream 3914   true scaffold_3: 3207067-3210980 Arabidopsis lyrata
AL3G18980 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 3207067-3209066 Arabidopsis lyrata
AL3G18980 5.0kb upstream 5.0kb upstream 6914   true scaffold_3: 3209067-3215980 Arabidopsis lyrata
AL3G18980 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 3210981-3215980 Arabidopsis lyrata
AL3G18980 5.0kb downstream 5.0kb downstream 6914   true scaffold_3: 3204067-3210980 Arabidopsis lyrata
AL3G18980 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 3204067-3209066 Arabidopsis lyrata
AL3G18980 10.0kb upstream 10.0kb upstream 11914   true scaffold_3: 3209067-3220980 Arabidopsis lyrata
AL3G18980 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 3210981-3220980 Arabidopsis lyrata
AL3G18980 10.0kb downstream 10.0kb downstream 11914   true scaffold_3: 3199067-3210980 Arabidopsis lyrata
AL3G18980 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 3199067-3209066 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365835 5261 Brassicaceae View MSA
123835010 5264 Brassicales-Malvales View MSA
124321992 5266 SBM View MSA
124246530 5268 Malvidae View MSA
124070625 5270 Rosid View MSA
123746709 5271 Pentapetalae View MSA
122795318 5272 Eudicot View MSA
122050562 5273 Angiosperm View MSA
121350610 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain