Gene : AL3G17710 A. lyrata v2.1

Defline:  (1 of 2) PTHR23118:SF6 - ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 1 Genomic Order:  735
Name:  ? AL3G17710 Secondary Identifier:  ? PAC:35943553

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5172 Arabidopsis lyrata pathologic  
Alyrata PWY-5173 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G17710 0.5kb upstream 0.5kb upstream 4889   true scaffold_3: 2770994-2775882 Arabidopsis lyrata
AL3G17710 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 2775383-2775882 Arabidopsis lyrata
AL3G17710 0.5kb downstream 0.5kb downstream 4889   true scaffold_3: 2770494-2775382 Arabidopsis lyrata
AL3G17710 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 2770494-2770993 Arabidopsis lyrata
AL3G17710 1.0kb upstream 1.0kb upstream 5389   true scaffold_3: 2770994-2776382 Arabidopsis lyrata
AL3G17710 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 2775383-2776382 Arabidopsis lyrata
AL3G17710 1.0kb downstream 1.0kb downstream 5389   true scaffold_3: 2769994-2775382 Arabidopsis lyrata
AL3G17710 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 2769994-2770993 Arabidopsis lyrata
AL3G17710 2.0kb upstream 2.0kb upstream 6389   true scaffold_3: 2770994-2777382 Arabidopsis lyrata
AL3G17710 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 2775383-2777382 Arabidopsis lyrata
AL3G17710 2.0kb downstream 2.0kb downstream 6389   true scaffold_3: 2768994-2775382 Arabidopsis lyrata
AL3G17710 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 2768994-2770993 Arabidopsis lyrata
AL3G17710 5.0kb upstream 5.0kb upstream 9389   true scaffold_3: 2770994-2780382 Arabidopsis lyrata
AL3G17710 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 2775383-2780382 Arabidopsis lyrata
AL3G17710 5.0kb downstream 5.0kb downstream 9389   true scaffold_3: 2765994-2775382 Arabidopsis lyrata
AL3G17710 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 2765994-2770993 Arabidopsis lyrata
AL3G17710 10.0kb upstream 10.0kb upstream 14389   true scaffold_3: 2770994-2785382 Arabidopsis lyrata
AL3G17710 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 2775383-2785382 Arabidopsis lyrata
AL3G17710 10.0kb downstream 10.0kb downstream 14389   true scaffold_3: 2760994-2775382 Arabidopsis lyrata
AL3G17710 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 2760994-2770993 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376807 5261 Brassicaceae View MSA
123838155 5264 Brassicales-Malvales View MSA
124340506 5266 SBM View MSA
124250755 5268 Malvidae View MSA
124062088 5270 Rosid View MSA
123736971 5271 Pentapetalae View MSA
122787632 5272 Eudicot View MSA
122045238 5273 Angiosperm View MSA
121345896 5274 Embryophyte View MSA
123427786 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain