Gene : AL3G21040 A. lyrata v2.1

Defline:  (1 of 7) 1.1.1.41 - Isocitrate dehydrogenase (NAD(+)) / Nicotinamide adenine dinucleotide isocitrate dehydrogenase Genomic Order:  1049
Name:  ? AL3G21040 Secondary Identifier:  ? PAC:35941727

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5464 Arabidopsis lyrata pathologic  
Alyrata PWY-5690 Arabidopsis lyrata pathologic  
Alyrata PWY-6549 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G21040 0.5kb upstream 0.5kb upstream 3216   true scaffold_3: 3881383-3884598 Arabidopsis lyrata
AL3G21040 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 3881383-3881882 Arabidopsis lyrata
AL3G21040 0.5kb downstream 0.5kb downstream 3216   true scaffold_3: 3881883-3885098 Arabidopsis lyrata
AL3G21040 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 3884599-3885098 Arabidopsis lyrata
AL3G21040 1.0kb upstream 1.0kb upstream 3716   true scaffold_3: 3880883-3884598 Arabidopsis lyrata
AL3G21040 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 3880883-3881882 Arabidopsis lyrata
AL3G21040 1.0kb downstream 1.0kb downstream 3716   true scaffold_3: 3881883-3885598 Arabidopsis lyrata
AL3G21040 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 3884599-3885598 Arabidopsis lyrata
AL3G21040 2.0kb upstream 2.0kb upstream 4716   true scaffold_3: 3879883-3884598 Arabidopsis lyrata
AL3G21040 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 3879883-3881882 Arabidopsis lyrata
AL3G21040 2.0kb downstream 2.0kb downstream 4716   true scaffold_3: 3881883-3886598 Arabidopsis lyrata
AL3G21040 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 3884599-3886598 Arabidopsis lyrata
AL3G21040 5.0kb upstream 5.0kb upstream 7716   true scaffold_3: 3876883-3884598 Arabidopsis lyrata
AL3G21040 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 3876883-3881882 Arabidopsis lyrata
AL3G21040 5.0kb downstream 5.0kb downstream 7716   true scaffold_3: 3881883-3889598 Arabidopsis lyrata
AL3G21040 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 3884599-3889598 Arabidopsis lyrata
AL3G21040 10.0kb upstream 10.0kb upstream 12716   true scaffold_3: 3871883-3884598 Arabidopsis lyrata
AL3G21040 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 3871883-3881882 Arabidopsis lyrata
AL3G21040 10.0kb downstream 10.0kb downstream 12716   true scaffold_3: 3881883-3894598 Arabidopsis lyrata
AL3G21040 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 3884599-3894598 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510628 5273 Angiosperm View MSA
122366336 5261 Brassicaceae View MSA
123799151 5264 Brassicales-Malvales View MSA
124296699 5266 SBM View MSA
124148776 5268 Malvidae View MSA
123874707 5270 Rosid View MSA
123458637 5271 Pentapetalae View MSA
122494038 5272 Eudicot View MSA
120783717 5274 Embryophyte View MSA
123425496 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain