Gene : AL3G26240 A. lyrata v2.1

Defline:  (1 of 1) PF07734//PF12708 - F-box associated (FBA_1) // Pectate lyase superfamily protein (Pectate_lyase_3) Genomic Order:  1543
Name:  ? AL3G26240 Secondary Identifier:  ? PAC:35942341

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G26240 0.5kb upstream 0.5kb upstream 4032   true scaffold_3: 5799675-5803706 Arabidopsis lyrata
AL3G26240 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 5803207-5803706 Arabidopsis lyrata
AL3G26240 0.5kb downstream 0.5kb downstream 4032   true scaffold_3: 5799175-5803206 Arabidopsis lyrata
AL3G26240 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 5799175-5799674 Arabidopsis lyrata
AL3G26240 1.0kb upstream 1.0kb upstream 4532   true scaffold_3: 5799675-5804206 Arabidopsis lyrata
AL3G26240 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 5803207-5804206 Arabidopsis lyrata
AL3G26240 1.0kb downstream 1.0kb downstream 4532   true scaffold_3: 5798675-5803206 Arabidopsis lyrata
AL3G26240 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 5798675-5799674 Arabidopsis lyrata
AL3G26240 2.0kb upstream 2.0kb upstream 5532   true scaffold_3: 5799675-5805206 Arabidopsis lyrata
AL3G26240 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 5803207-5805206 Arabidopsis lyrata
AL3G26240 2.0kb downstream 2.0kb downstream 5532   true scaffold_3: 5797675-5803206 Arabidopsis lyrata
AL3G26240 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 5797675-5799674 Arabidopsis lyrata
AL3G26240 5.0kb upstream 5.0kb upstream 8532   true scaffold_3: 5799675-5808206 Arabidopsis lyrata
AL3G26240 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 5803207-5808206 Arabidopsis lyrata
AL3G26240 5.0kb downstream 5.0kb downstream 8532   true scaffold_3: 5794675-5803206 Arabidopsis lyrata
AL3G26240 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 5794675-5799674 Arabidopsis lyrata
AL3G26240 10.0kb upstream 10.0kb upstream 13532   true scaffold_3: 5799675-5813206 Arabidopsis lyrata
AL3G26240 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 5803207-5813206 Arabidopsis lyrata
AL3G26240 10.0kb downstream 10.0kb downstream 13532   true scaffold_3: 5789675-5803206 Arabidopsis lyrata
AL3G26240 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 5789675-5799674 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377836 5261 Brassicaceae View MSA
123841196 5264 Brassicales-Malvales View MSA
124349703 5266 SBM View MSA
124252748 5268 Malvidae View MSA
124074380 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain