Gene : AL3G25360 A. lyrata v2.1

Defline:  (1 of 2) K00167 - 2-oxoisovalerate dehydrogenase E1 component beta subunit (BCKDHB, bkdA2) Genomic Order:  1457
Name:  ? AL3G25360 Secondary Identifier:  ? PAC:35943306

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5046 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G25360 0.5kb upstream 0.5kb upstream 2775   true scaffold_3: 5466040-5468814 Arabidopsis lyrata
AL3G25360 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 5468315-5468814 Arabidopsis lyrata
AL3G25360 0.5kb downstream 0.5kb downstream 2775   true scaffold_3: 5465540-5468314 Arabidopsis lyrata
AL3G25360 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 5465540-5466039 Arabidopsis lyrata
AL3G25360 1.0kb upstream 1.0kb upstream 3275   true scaffold_3: 5466040-5469314 Arabidopsis lyrata
AL3G25360 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 5468315-5469314 Arabidopsis lyrata
AL3G25360 1.0kb downstream 1.0kb downstream 3275   true scaffold_3: 5465040-5468314 Arabidopsis lyrata
AL3G25360 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 5465040-5466039 Arabidopsis lyrata
AL3G25360 2.0kb upstream 2.0kb upstream 4275   true scaffold_3: 5466040-5470314 Arabidopsis lyrata
AL3G25360 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 5468315-5470314 Arabidopsis lyrata
AL3G25360 2.0kb downstream 2.0kb downstream 4275   true scaffold_3: 5464040-5468314 Arabidopsis lyrata
AL3G25360 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 5464040-5466039 Arabidopsis lyrata
AL3G25360 5.0kb upstream 5.0kb upstream 7275   true scaffold_3: 5466040-5473314 Arabidopsis lyrata
AL3G25360 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 5468315-5473314 Arabidopsis lyrata
AL3G25360 5.0kb downstream 5.0kb downstream 7275   true scaffold_3: 5461040-5468314 Arabidopsis lyrata
AL3G25360 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 5461040-5466039 Arabidopsis lyrata
AL3G25360 10.0kb upstream 10.0kb upstream 12275   true scaffold_3: 5466040-5478314 Arabidopsis lyrata
AL3G25360 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 5468315-5478314 Arabidopsis lyrata
AL3G25360 10.0kb downstream 10.0kb downstream 12275   true scaffold_3: 5456040-5468314 Arabidopsis lyrata
AL3G25360 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 5456040-5466039 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377784 5261 Brassicaceae View MSA
123830123 5264 Brassicales-Malvales View MSA
124341245 5266 SBM View MSA
124243640 5268 Malvidae View MSA
124067270 5270 Rosid View MSA
123743874 5271 Pentapetalae View MSA
122787684 5272 Eudicot View MSA
122046166 5273 Angiosperm View MSA
121344271 5274 Embryophyte View MSA
123424966 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain