Gene : AL3G39000 A. lyrata v2.1

Defline:  (1 of 2) PTHR10543:SF48 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED6, CHLOROPLASTIC Genomic Order:  2758
Name:  ? AL3G39000 Secondary Identifier:  ? PAC:35944232

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-695 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G39000 0.5kb upstream 0.5kb upstream 2439   true scaffold_3: 11265555-11267993 Arabidopsis lyrata
AL3G39000 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 11267494-11267993 Arabidopsis lyrata
AL3G39000 0.5kb downstream 0.5kb downstream 2439   true scaffold_3: 11265055-11267493 Arabidopsis lyrata
AL3G39000 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 11265055-11265554 Arabidopsis lyrata
AL3G39000 1.0kb upstream 1.0kb upstream 2939   true scaffold_3: 11265555-11268493 Arabidopsis lyrata
AL3G39000 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 11267494-11268493 Arabidopsis lyrata
AL3G39000 1.0kb downstream 1.0kb downstream 2939   true scaffold_3: 11264555-11267493 Arabidopsis lyrata
AL3G39000 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 11264555-11265554 Arabidopsis lyrata
AL3G39000 2.0kb upstream 2.0kb upstream 3939   true scaffold_3: 11265555-11269493 Arabidopsis lyrata
AL3G39000 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 11267494-11269493 Arabidopsis lyrata
AL3G39000 2.0kb downstream 2.0kb downstream 3939   true scaffold_3: 11263555-11267493 Arabidopsis lyrata
AL3G39000 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 11263555-11265554 Arabidopsis lyrata
AL3G39000 5.0kb upstream 5.0kb upstream 6939   true scaffold_3: 11265555-11272493 Arabidopsis lyrata
AL3G39000 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 11267494-11272493 Arabidopsis lyrata
AL3G39000 5.0kb downstream 5.0kb downstream 6939   true scaffold_3: 11260555-11267493 Arabidopsis lyrata
AL3G39000 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 11260555-11265554 Arabidopsis lyrata
AL3G39000 10.0kb upstream 10.0kb upstream 11939   true scaffold_3: 11265555-11277493 Arabidopsis lyrata
AL3G39000 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 11267494-11277493 Arabidopsis lyrata
AL3G39000 10.0kb downstream 10.0kb downstream 11939   true scaffold_3: 11255555-11267493 Arabidopsis lyrata
AL3G39000 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 11255555-11265554 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368951 5261 Brassicaceae View MSA
123833807 5264 Brassicales-Malvales View MSA
124344932 5266 SBM View MSA
124242947 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain