Gene : AL3G38770 A. lyrata v2.1

Defline:  (1 of 2) 6.2.1.20 - Long-chain-fatty-acid--[acyl-carrier-protein] ligase / Acyl-[acyl-carrier-protein] synthetase Genomic Order:  2735
Name:  ? AL3G38770 Secondary Identifier:  ? PAC:35943633

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6622 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G38770 0.5kb upstream 0.5kb upstream 7259   true scaffold_3: 11119314-11126572 Arabidopsis lyrata
AL3G38770 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 11126073-11126572 Arabidopsis lyrata
AL3G38770 0.5kb downstream 0.5kb downstream 7259   true scaffold_3: 11118814-11126072 Arabidopsis lyrata
AL3G38770 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 11118814-11119313 Arabidopsis lyrata
AL3G38770 1.0kb upstream 1.0kb upstream 7759   true scaffold_3: 11119314-11127072 Arabidopsis lyrata
AL3G38770 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 11126073-11127072 Arabidopsis lyrata
AL3G38770 1.0kb downstream 1.0kb downstream 7759   true scaffold_3: 11118314-11126072 Arabidopsis lyrata
AL3G38770 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 11118314-11119313 Arabidopsis lyrata
AL3G38770 2.0kb upstream 2.0kb upstream 8759   true scaffold_3: 11119314-11128072 Arabidopsis lyrata
AL3G38770 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 11126073-11128072 Arabidopsis lyrata
AL3G38770 2.0kb downstream 2.0kb downstream 8759   true scaffold_3: 11117314-11126072 Arabidopsis lyrata
AL3G38770 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 11117314-11119313 Arabidopsis lyrata
AL3G38770 5.0kb upstream 5.0kb upstream 11759   true scaffold_3: 11119314-11131072 Arabidopsis lyrata
AL3G38770 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 11126073-11131072 Arabidopsis lyrata
AL3G38770 5.0kb downstream 5.0kb downstream 11759   true scaffold_3: 11114314-11126072 Arabidopsis lyrata
AL3G38770 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 11114314-11119313 Arabidopsis lyrata
AL3G38770 10.0kb upstream 10.0kb upstream 16759   true scaffold_3: 11119314-11136072 Arabidopsis lyrata
AL3G38770 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 11126073-11136072 Arabidopsis lyrata
AL3G38770 10.0kb downstream 10.0kb downstream 16759   true scaffold_3: 11109314-11126072 Arabidopsis lyrata
AL3G38770 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 11109314-11119313 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372765 5261 Brassicaceae View MSA
123834953 5264 Brassicales-Malvales View MSA
124346454 5266 SBM View MSA
124243383 5268 Malvidae View MSA
124063017 5270 Rosid View MSA
123740730 5271 Pentapetalae View MSA
122788844 5272 Eudicot View MSA
122041588 5273 Angiosperm View MSA
121344484 5274 Embryophyte View MSA
123427454 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain