Gene : AL3G42240 A. lyrata v2.1

Defline:  (1 of 2) K13034 - L-3-cyanoalanine synthase/ cysteine synthase (ATCYSC1) Genomic Order:  3046
Name:  ? AL3G42240 Secondary Identifier:  ? PAC:35942614

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata ASPSYNII-PWY Arabidopsis lyrata pathologic  
Alyrata CYSTSYN-PWY Arabidopsis lyrata pathologic  
Alyrata P401-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-6936 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G42240 0.5kb upstream 0.5kb upstream 2542   true scaffold_3: 13483372-13485913 Arabidopsis lyrata
AL3G42240 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 13483372-13483871 Arabidopsis lyrata
AL3G42240 0.5kb downstream 0.5kb downstream 2542   true scaffold_3: 13483872-13486413 Arabidopsis lyrata
AL3G42240 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 13485914-13486413 Arabidopsis lyrata
AL3G42240 1.0kb upstream 1.0kb upstream 3042   true scaffold_3: 13482872-13485913 Arabidopsis lyrata
AL3G42240 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 13482872-13483871 Arabidopsis lyrata
AL3G42240 1.0kb downstream 1.0kb downstream 3042   true scaffold_3: 13483872-13486913 Arabidopsis lyrata
AL3G42240 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 13485914-13486913 Arabidopsis lyrata
AL3G42240 2.0kb upstream 2.0kb upstream 4042   true scaffold_3: 13481872-13485913 Arabidopsis lyrata
AL3G42240 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 13481872-13483871 Arabidopsis lyrata
AL3G42240 2.0kb downstream 2.0kb downstream 4042   true scaffold_3: 13483872-13487913 Arabidopsis lyrata
AL3G42240 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 13485914-13487913 Arabidopsis lyrata
AL3G42240 5.0kb upstream 5.0kb upstream 7042   true scaffold_3: 13478872-13485913 Arabidopsis lyrata
AL3G42240 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 13478872-13483871 Arabidopsis lyrata
AL3G42240 5.0kb downstream 5.0kb downstream 7042   true scaffold_3: 13483872-13490913 Arabidopsis lyrata
AL3G42240 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 13485914-13490913 Arabidopsis lyrata
AL3G42240 10.0kb upstream 10.0kb upstream 12042   true scaffold_3: 13473872-13485913 Arabidopsis lyrata
AL3G42240 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 13473872-13483871 Arabidopsis lyrata
AL3G42240 10.0kb downstream 10.0kb downstream 12042   true scaffold_3: 13483872-13495913 Arabidopsis lyrata
AL3G42240 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 13485914-13495913 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040912 5273 Angiosperm View MSA
122327538 5261 Brassicaceae View MSA
123768961 5264 Brassicales-Malvales View MSA
124267537 5266 SBM View MSA
124244818 5268 Malvidae View MSA
124062527 5270 Rosid View MSA
123753614 5271 Pentapetalae View MSA
122790357 5272 Eudicot View MSA
121309765 5274 Embryophyte View MSA
123347430 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain