Gene : AL3G45850 A. lyrata v2.1

Defline:  (1 of 1) K00140 - malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase (mmsA, iolA, ALDH6A1) Genomic Order:  3339
Name:  ? AL3G45850 Secondary Identifier:  ? PAC:35943846

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata VALDEG-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G45850 0.5kb upstream 0.5kb upstream 4882   true scaffold_3: 18726699-18731580 Arabidopsis lyrata
AL3G45850 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 18731081-18731580 Arabidopsis lyrata
AL3G45850 0.5kb downstream 0.5kb downstream 4882   true scaffold_3: 18726199-18731080 Arabidopsis lyrata
AL3G45850 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 18726199-18726698 Arabidopsis lyrata
AL3G45850 1.0kb upstream 1.0kb upstream 5382   true scaffold_3: 18726699-18732080 Arabidopsis lyrata
AL3G45850 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 18731081-18732080 Arabidopsis lyrata
AL3G45850 1.0kb downstream 1.0kb downstream 5382   true scaffold_3: 18725699-18731080 Arabidopsis lyrata
AL3G45850 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 18725699-18726698 Arabidopsis lyrata
AL3G45850 2.0kb upstream 2.0kb upstream 6382   true scaffold_3: 18726699-18733080 Arabidopsis lyrata
AL3G45850 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 18731081-18733080 Arabidopsis lyrata
AL3G45850 2.0kb downstream 2.0kb downstream 6382   true scaffold_3: 18724699-18731080 Arabidopsis lyrata
AL3G45850 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 18724699-18726698 Arabidopsis lyrata
AL3G45850 5.0kb upstream 5.0kb upstream 9382   true scaffold_3: 18726699-18736080 Arabidopsis lyrata
AL3G45850 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 18731081-18736080 Arabidopsis lyrata
AL3G45850 5.0kb downstream 5.0kb downstream 9382   true scaffold_3: 18721699-18731080 Arabidopsis lyrata
AL3G45850 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 18721699-18726698 Arabidopsis lyrata
AL3G45850 10.0kb upstream 10.0kb upstream 14382   true scaffold_3: 18726699-18741080 Arabidopsis lyrata
AL3G45850 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 18731081-18741080 Arabidopsis lyrata
AL3G45850 10.0kb downstream 10.0kb downstream 14382   true scaffold_3: 18716699-18731080 Arabidopsis lyrata
AL3G45850 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 18716699-18726698 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361857 5261 Brassicaceae View MSA
123828012 5264 Brassicales-Malvales View MSA
124343113 5266 SBM View MSA
124237006 5268 Malvidae View MSA
124063122 5270 Rosid View MSA
123738991 5271 Pentapetalae View MSA
122791664 5272 Eudicot View MSA
122044147 5273 Angiosperm View MSA
121345604 5274 Embryophyte View MSA
123424668 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain