Gene : AL3G43360 A. lyrata v2.1

Defline:  (1 of 1) 5.3.1.23 - S-methyl-5-thioribose-1-phosphate isomerase / S-methyl-5-thio-D-ribose-1-phosphate aldose-ketose-isomerase Genomic Order:  3142
Name:  ? AL3G43360 Secondary Identifier:  ? PAC:35942533

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-4361 Arabidopsis lyrata pathologic  
Alyrata PWY-7270 Arabidopsis lyrata pathologic  
Alyrata PWY-7528 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G43360 0.5kb upstream 0.5kb upstream 3063   true scaffold_3: 14330758-14333820 Arabidopsis lyrata
AL3G43360 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 14330758-14331257 Arabidopsis lyrata
AL3G43360 0.5kb downstream 0.5kb downstream 3063   true scaffold_3: 14331258-14334320 Arabidopsis lyrata
AL3G43360 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 14333821-14334320 Arabidopsis lyrata
AL3G43360 1.0kb upstream 1.0kb upstream 3563   true scaffold_3: 14330258-14333820 Arabidopsis lyrata
AL3G43360 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 14330258-14331257 Arabidopsis lyrata
AL3G43360 1.0kb downstream 1.0kb downstream 3563   true scaffold_3: 14331258-14334820 Arabidopsis lyrata
AL3G43360 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 14333821-14334820 Arabidopsis lyrata
AL3G43360 2.0kb upstream 2.0kb upstream 4563   true scaffold_3: 14329258-14333820 Arabidopsis lyrata
AL3G43360 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 14329258-14331257 Arabidopsis lyrata
AL3G43360 2.0kb downstream 2.0kb downstream 4563   true scaffold_3: 14331258-14335820 Arabidopsis lyrata
AL3G43360 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 14333821-14335820 Arabidopsis lyrata
AL3G43360 5.0kb upstream 5.0kb upstream 7563   true scaffold_3: 14326258-14333820 Arabidopsis lyrata
AL3G43360 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 14326258-14331257 Arabidopsis lyrata
AL3G43360 5.0kb downstream 5.0kb downstream 7563   true scaffold_3: 14331258-14338820 Arabidopsis lyrata
AL3G43360 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 14333821-14338820 Arabidopsis lyrata
AL3G43360 10.0kb upstream 10.0kb upstream 12563   true scaffold_3: 14321258-14333820 Arabidopsis lyrata
AL3G43360 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 14321258-14331257 Arabidopsis lyrata
AL3G43360 10.0kb downstream 10.0kb downstream 12563   true scaffold_3: 14331258-14343820 Arabidopsis lyrata
AL3G43360 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 14333821-14343820 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360311 5261 Brassicaceae View MSA
123829438 5264 Brassicales-Malvales View MSA
124345905 5266 SBM View MSA
124238790 5268 Malvidae View MSA
124060423 5270 Rosid View MSA
123740094 5271 Pentapetalae View MSA
122788864 5272 Eudicot View MSA
122043863 5273 Angiosperm View MSA
121310201 5274 Embryophyte View MSA
123428305 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain