Gene : AL3G43220 A. lyrata v2.1

Defline:  (1 of 6) 4.2.1.3 - Aconitate hydratase / Citrate(isocitrate) hydro-lyase Genomic Order:  3130
Name:  ? AL3G43220 Secondary Identifier:  ? PAC:35944099

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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata GLYOXYLATE-BYPASS Arabidopsis lyrata pathologic  
Alyrata PWY-5464 Arabidopsis lyrata pathologic  
Alyrata PWY-561 Arabidopsis lyrata pathologic  
Alyrata PWY-5690 Arabidopsis lyrata pathologic  
Alyrata PWY-6549 Arabidopsis lyrata pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G43220 0.5kb upstream 0.5kb upstream 5326   true scaffold_3: 14226996-14232321 Arabidopsis lyrata
AL3G43220 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 14226996-14227495 Arabidopsis lyrata
AL3G43220 0.5kb downstream 0.5kb downstream 5326   true scaffold_3: 14227496-14232821 Arabidopsis lyrata
AL3G43220 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 14232322-14232821 Arabidopsis lyrata
AL3G43220 1.0kb upstream 1.0kb upstream 5826   true scaffold_3: 14226496-14232321 Arabidopsis lyrata
AL3G43220 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 14226496-14227495 Arabidopsis lyrata
AL3G43220 1.0kb downstream 1.0kb downstream 5826   true scaffold_3: 14227496-14233321 Arabidopsis lyrata
AL3G43220 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 14232322-14233321 Arabidopsis lyrata
AL3G43220 2.0kb upstream 2.0kb upstream 6826   true scaffold_3: 14225496-14232321 Arabidopsis lyrata
AL3G43220 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 14225496-14227495 Arabidopsis lyrata
AL3G43220 2.0kb downstream 2.0kb downstream 6826   true scaffold_3: 14227496-14234321 Arabidopsis lyrata
AL3G43220 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 14232322-14234321 Arabidopsis lyrata
AL3G43220 5.0kb upstream 5.0kb upstream 9826   true scaffold_3: 14222496-14232321 Arabidopsis lyrata
AL3G43220 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 14222496-14227495 Arabidopsis lyrata
AL3G43220 5.0kb downstream 5.0kb downstream 9826   true scaffold_3: 14227496-14237321 Arabidopsis lyrata
AL3G43220 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 14232322-14237321 Arabidopsis lyrata
AL3G43220 10.0kb upstream 10.0kb upstream 14826   true scaffold_3: 14217496-14232321 Arabidopsis lyrata
AL3G43220 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 14217496-14227495 Arabidopsis lyrata
AL3G43220 10.0kb downstream 10.0kb downstream 14826   true scaffold_3: 14227496-14242321 Arabidopsis lyrata
AL3G43220 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 14232322-14242321 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379394 5261 Brassicaceae View MSA
123836959 5264 Brassicales-Malvales View MSA
124346925 5266 SBM View MSA
124245948 5268 Malvidae View MSA
124069604 5270 Rosid View MSA
123752886 5271 Pentapetalae View MSA
122795491 5272 Eudicot View MSA
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain