Gene : AL3G51730 A. lyrata v2.1

Defline:  (1 of 2) K00234 - succinate dehydrogenase (ubiquinone) flavoprotein subunit (SDHA, SDH1) Genomic Order:  3852
Name:  ? AL3G51730 Secondary Identifier:  ? PAC:35941366

Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-3781 Arabidopsis lyrata pathologic  
Alyrata PWY-4302 Arabidopsis lyrata pathologic  
Alyrata PWY-5464 Arabidopsis lyrata pathologic  
Alyrata PWY-561 Arabidopsis lyrata pathologic  
Alyrata PWY-5690 Arabidopsis lyrata pathologic  
Alyrata PWY-7279 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G51730 0.5kb upstream 0.5kb upstream 4506   true scaffold_3: 22775352-22779857 Arabidopsis lyrata
AL3G51730 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 22779358-22779857 Arabidopsis lyrata
AL3G51730 0.5kb downstream 0.5kb downstream 4506   true scaffold_3: 22774852-22779357 Arabidopsis lyrata
AL3G51730 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 22774852-22775351 Arabidopsis lyrata
AL3G51730 1.0kb upstream 1.0kb upstream 5006   true scaffold_3: 22775352-22780357 Arabidopsis lyrata
AL3G51730 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 22779358-22780357 Arabidopsis lyrata
AL3G51730 1.0kb downstream 1.0kb downstream 5006   true scaffold_3: 22774352-22779357 Arabidopsis lyrata
AL3G51730 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 22774352-22775351 Arabidopsis lyrata
AL3G51730 2.0kb upstream 2.0kb upstream 6006   true scaffold_3: 22775352-22781357 Arabidopsis lyrata
AL3G51730 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 22779358-22781357 Arabidopsis lyrata
AL3G51730 2.0kb downstream 2.0kb downstream 6006   true scaffold_3: 22773352-22779357 Arabidopsis lyrata
AL3G51730 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 22773352-22775351 Arabidopsis lyrata
AL3G51730 5.0kb upstream 5.0kb upstream 9006   true scaffold_3: 22775352-22784357 Arabidopsis lyrata
AL3G51730 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 22779358-22784357 Arabidopsis lyrata
AL3G51730 5.0kb downstream 5.0kb downstream 9006   true scaffold_3: 22770352-22779357 Arabidopsis lyrata
AL3G51730 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 22770352-22775351 Arabidopsis lyrata
AL3G51730 10.0kb upstream 10.0kb upstream 14006   true scaffold_3: 22775352-22789357 Arabidopsis lyrata
AL3G51730 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 22779358-22789357 Arabidopsis lyrata
AL3G51730 10.0kb downstream 10.0kb downstream 14006   true scaffold_3: 22765352-22779357 Arabidopsis lyrata
AL3G51730 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 22765352-22775351 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360488 5261 Brassicaceae View MSA
123797962 5264 Brassicales-Malvales View MSA
124295657 5266 SBM View MSA
124254053 5268 Malvidae View MSA
124063356 5270 Rosid View MSA
123753034 5271 Pentapetalae View MSA
122790960 5272 Eudicot View MSA
122043363 5273 Angiosperm View MSA
121346345 5274 Embryophyte View MSA
123424943 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain